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Report for CCDS39123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39123.1 Public Mus musculus 5 Cenpc1 23 108 98 CCDS HistoryNCBI Gene:12617Re-query CCDS DB by CCDS ID:39123.1Re-query CCDS DB by GeneID:12617See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031170.9 ENSMUSP00000031170.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031170.9Link to Ensembl Protein Viewer:ENSMUSP00000031170.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031170Re-query CCDS DB by Protein ID:ENSMUSP00000031170
Original member Current member NCBI NM_007683.4 NP_031709.2 Accepted alive Link to Nucleotide Sequence:NM_007683.4Link to Protein Sequence:NP_031709.2Re-query CCDS DB by Nucleotide ID:NM_007683Re-query CCDS DB by Protein ID:NP_031709Link to BLAST:NP_031709.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031709.2 906 P49452 906 100% 0 0

Chromosomal Locations for CCDS 39123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86012257 86012327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86013420 86013510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86016202 86016356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86018389 86018484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86020829 86020951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86022379 86022483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86029134 86029190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86032389 86032471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86033565 86033711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86034231 86034510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86035416 86035589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86037312 86037913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86045292 86045501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86046379 86046580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86047584 86047683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86052171 86052241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86058155 86058246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86062004 86062047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86065328 86065345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2721 nt):
ATGGCCTCGTTCCATCTGGATCATCTAAAGAACTACCACAGAAGATATTGCCGGTCTTCCAGAGCACCCA
ACATTCATACAAAAAAAGGCCAGAACATGCTGGAAATCTTACAAGATTGTTTTGAAGATCAGAGTAAGGC
TTCATTTCTTGATGATTTTACAGAGTCATTGACTTCTTCAACACAAAAAAAGAAAGCCAATTATAGTCAA
TCATCAAGCAAAAAGTGCCCAGAGTCACATTCCAAACCAGTTCCAGTGTCTTCAAGGACAGGAGAAGCTT
CTCTGCAAGCGTCTGCAGAGCCCAGTGAAGCCGCTGGTGGATCAGTTCAGGCTAATGAAGTTCACCATGG
TGCGTCTGATGAATTGGACTTATGTGTTGGCTCCCCTGTGGTTCTCCTGGATGCAAACGTCAACACGTTA
CAGAAAGCCGCTTCACCTGCCGGCCAAAAGAGAGTGGCTTCTGTCTCAAGGAGTCCAGTAGATAGGCAGG
CTTCAAATAAAAACATTTCTTTTAAAACCAGGAAAAGGTTAAACTTTGAAGATAAAGTTACTTTGAGCAC
AGCAGAAACAGAGAACAGTGTGTTACAAGTAGAGGATAACTTATCCAAGGGACAAGAAGGGACATCATCA
GAAATCACTCAGAAAAGAGACGATCTGAGTTCTGATGTCCAATCACGTTCTAAGAAGAATTTTTCGGAGT
TGTTTTTAGAGACTGTCAAGAGGAAAAGTAAATCCAGTTCTGTGGTCAGGCACACAGCAGCAGTTCCATT
TTCTCCGCCTCCTCCAAGTGACATGAAATTATTAGAAGATGAATTTATTATTGATCGGTCAGATAGAAGT
TTTTCAAGTCGACTTTGGGTGATGATACCAAGCAAAGACAGGCATCTGAGCGCCCACAAGCCATCTCCTG
AAAACACTGCACTGCTTCAAGGTAAGAAGTCAAGAGAGAAATCTCATAGTTTATCTGCAATGACGTTTGC
AAGAAACACACAGTCTGATAAGGCTCACCCAATAGAGGAAGCTCAGCTCTCTGTTGAAGAAAACCCGGCA
ACTACTTGTACAGATGAGTTGGAAAATGATTGTCGATCTCCTGAAAATAAAATGCAATCTGAGACTGCCA
AAACCCCACCCGCATGGGAAAGGACTACGAAACAGAGCCAGAGGAGAGTGTCTAAGCCTAAAGCAGCTGA
AGAGCTCAGGAAGGGACAGAGTAGCTGGGAAAATAGCAATGTGTCAAACACTGGCCAAGACAAGCTACAG
ATCAACTCGAAAAGAAATATGAAGGACTGTGAAGAGGTGAGGAATGAGCCTAATCCCAAGAAACAGAAGC
CAGCTCTTGAAAATAAGAAAAAAACCAATAGCACCCAAACCAATAAGGAAAAATCTGGAAAGAAATTTTT
TTCTGGTGGGTCCAAGAACAAATTTGTTCCCAAAAAAGTAACTTTGACTTCCAGGAGAAGTTGTAGAATT
TCTCAGCGTCCATCTGAGTGGTGGAGGGTAAAATCAGATGAAAGTTCTGTTGATAGAAATCCTTCAAAAG
AAAATAACTCACCAGTGGTATATCCCAATAAAAAGAAGCAGACTAAGAGAAATCATGTATCTAAGAGGGC
TGGGAAGAAACCTGGTTCATCAAAAAGACAGAAGACAGAGATGAGCCCAAGAGTACAGAAGTCTTTAAAT
GTAAAGGATTCTGGAGGAACTGTTAGTGGCCATGATGACACTTCTCGTTCCCAGAGGAAGCCATTGAAAA
TCATTGAGGCAGACCCAACTCAGAAGAGCCTTGCTATTTCTCGACCTAAAAGAGGCTGTAAGTATCGAAA
CAATGTTATGACATCACCGAATGTTCATTTAAAGTCTCATACTGAGGAATATACAAGCAAGACACAAATG
GAGTCTGCTTCCAATTCAGAAATGTCTAAACGTTCAGTGTGGGAAGAAAGTGGACCTTCCAGGTTCAAGA
ATTATGAAATGCCAGGGAGCAGTAATTCTGAGATGGGTGATGAACAGGACCAGAAGAGTTTGCATTTTAC
AACAAGAAGTTTTAATATGGTACCAGATAAAAAATTACATCACAAATTAGTACTGCCCTCCAACTCACCA
AATGTTCGTCGATCTAATAGAATACGTTTGAAACCTCTGGAGTATTGGCGAGGGGAACGGGTAGATTATC
AAGAAAGTTCGTCGGGACAACTTGTGCTTGAAATAATATCCCCATCTTCAGTACCCACGAAAATAAAGGC
ACAAAGAAACCTCGGCAAAGTCAACAAAAAAGTTACCAAGAAGCCGACCCATCTCAATAGCCATGAAAAG
GCTAAGATGGAGCTGCCTCTGGATATGCGTCTGGGAGATCCCTTTCAGGCAACATTGGCGAAGGACCCAG
AAACCGCAGAGCTTGTCCCCATGGATCTTATAAGACCACGAGATACATACCGCTTTTTTGTTGAGCAACA
TGGTTTGAAAGTTTTTAAAACATTGGATACAATATATTTTTCTACTGGAAAATTGGTTTTAGGACCTTAT
GAAGAGAAAGGAAAACAGCATGTTGGCCAAGATATATTGGTTTTTTATGTTAACTTTGGTGACCTTTTAT
GTACATTACATGAAACACCTTATAAGTTAACTACTGGGGATTCATTCTATGTTCCTTCAGGTAATCATTA
CAACATTAAAAACCTCTTGAATGTGGAAAGTAGTCTTCTTTTTACTCAAATAAAAAGGTGA

Translation (906 aa):
MASFHLDHLKNYHRRYCRSSRAPNIHTKKGQNMLEILQDCFEDQSKASFLDDFTESLTSSTQKKKANYSQ
SSSKKCPESHSKPVPVSSRTGEASLQASAEPSEAAGGSVQANEVHHGASDELDLCVGSPVVLLDANVNTL
QKAASPAGQKRVASVSRSPVDRQASNKNISFKTRKRLNFEDKVTLSTAETENSVLQVEDNLSKGQEGTSS
EITQKRDDLSSDVQSRSKKNFSELFLETVKRKSKSSSVVRHTAAVPFSPPPPSDMKLLEDEFIIDRSDRS
FSSRLWVMIPSKDRHLSAHKPSPENTALLQGKKSREKSHSLSAMTFARNTQSDKAHPIEEAQLSVEENPA
TTCTDELENDCRSPENKMQSETAKTPPAWERTTKQSQRRVSKPKAAEELRKGQSSWENSNVSNTGQDKLQ
INSKRNMKDCEEVRNEPNPKKQKPALENKKKTNSTQTNKEKSGKKFFSGGSKNKFVPKKVTLTSRRSCRI
SQRPSEWWRVKSDESSVDRNPSKENNSPVVYPNKKKQTKRNHVSKRAGKKPGSSKRQKTEMSPRVQKSLN
VKDSGGTVSGHDDTSRSQRKPLKIIEADPTQKSLAISRPKRGCKYRNNVMTSPNVHLKSHTEEYTSKTQM
ESASNSEMSKRSVWEESGPSRFKNYEMPGSSNSEMGDEQDQKSLHFTTRSFNMVPDKKLHHKLVLPSNSP
NVRRSNRIRLKPLEYWRGERVDYQESSSGQLVLEIISPSSVPTKIKAQRNLGKVNKKVTKKPTHLNSHEK
AKMELPLDMRLGDPFQATLAKDPETAELVPMDLIRPRDTYRFFVEQHGLKVFKTLDTIYFSTGKLVLGPY
EEKGKQHVGQDILVFYVNFGDLLCTLHETPYKLTTGDSFYVPSGNHYNIKNLLNVESSLLFTQIKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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