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Report for CCDS39100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39100.1 Public Mus musculus 5 Rhoh 23 108 98 CCDS HistoryNCBI Gene:74734Re-query CCDS DB by CCDS ID:39100.1Re-query CCDS DB by GeneID:74734See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031106.7 ENSMUSP00000031106.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031106.7Link to Ensembl Protein Viewer:ENSMUSP00000031106.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031106Re-query CCDS DB by Protein ID:ENSMUSP00000031106
Original member Current member EBI ENSMUST00000201533.1 ENSMUSP00000143810.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201533.1Link to Ensembl Protein Viewer:ENSMUSP00000143810.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201533Re-query CCDS DB by Protein ID:ENSMUSP00000143810
Original member Current member NCBI NM_001081105.2 NP_001074574.1 Accepted alive Link to Nucleotide Sequence:NM_001081105.2Link to Protein Sequence:NP_001074574.1Re-query CCDS DB by Nucleotide ID:NM_001081105Re-query CCDS DB by Protein ID:NP_001074574Link to BLAST:NP_001074574.1
Original member Current member NCBI NM_001363454.1 NP_001350383.1 Accepted alive Link to Nucleotide Sequence:NM_001363454.1Link to Protein Sequence:NP_001350383.1Re-query CCDS DB by Nucleotide ID:NM_001363454Re-query CCDS DB by Protein ID:NP_001350383Link to BLAST:NP_001350383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074574.1 191 Q9D3G9 191 100% 0 0
NP_001350383.1 191 Q9D3G9 191 100% 0 0

Chromosomal Locations for CCDS 39100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65892389 65892964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGCTGAGCTCAATCAAGTGCGTGCTGGTAGGGGACAGTGCTGTGGGGAAAACCTCACTGTTGGTGCGCT
TCACCTCTGAGACCTTCCCGGAGGCCTACAAACCCACGGTGTACGAGAATACGGGTGTAGACGTCTTCAT
GGATGGCATCCAGATCAGCCTGGGTCTCTGGGACACTGCCGGCAACGACGCCTTCAGAAGTATCCGGCCC
CTGTCCTACCAGCAGGCAGACGTGGTACTGATGTGCTACTCTGTGGCCAACCATAACTCGTTCCTGAACT
TGAAGAACAAATGGATTAGTGAGATCAGGAGCAACCTACCCTGTACCCCGGTGCTGGTTGTGGCCACACA
GACGGACCAGAGAGAGGTGGGACCTCACAGGGCTTCCTGCATCAATGCCATAGAAGGGAAGAGACTTGCC
CAGGATGTGAGAGCCAAGGGCTACCTGGAGTGCTCAGCCCTCAGCAACCGGGGAGTACAGCAGGTATTTG
AATGTGCTGTCCGAACAGCTGTCAACCAGGCCAGGAGGCGAAACAGAAGGAAGCTGTTCTCCATCAATGA
ATGCAAGATCTTCTAA

Translation (191 aa):
MLSSIKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRP
LSYQQADVVLMCYSVANHNSFLNLKNKWISEIRSNLPCTPVLVVATQTDQREVGPHRASCINAIEGKRLA
QDVRAKGYLECSALSNRGVQQVFECAVRTAVNQARRRNRRKLFSINECKIF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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