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Report for CCDS39072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39072.1 Under review, update Mus musculus 5 Psapl1 23 108 98 CCDS HistoryNCBI Gene:76943Re-query CCDS DB by CCDS ID:39072.1Re-query CCDS DB by GeneID:76943See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 39072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052224.5 ENSMUSP00000100594.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052224.5Link to Ensembl Protein Viewer:ENSMUSP00000100594.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052224Re-query CCDS DB by Protein ID:ENSMUSP00000100594
Original member NCBI NM_175249.3 NP_780458.2 Updated not alive Link to Nucleotide Sequence:NM_175249.3Link to Protein Sequence:NP_780458.2Re-query CCDS DB by Nucleotide ID:NM_175249Re-query CCDS DB by Protein ID:NP_780458
Current member NCBI NM_175249.4 NP_780458.3 Pending alive Link to Nucleotide Sequence:NM_175249.4Link to Protein Sequence:NP_780458.3Re-query CCDS DB by Nucleotide ID:NM_175249Re-query CCDS DB by Protein ID:NP_780458Link to BLAST:NP_780458.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780458.3 522 Q8C1C1 522 100% 0 0

Chromosomal Locations for CCDS 39072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36204066 36205643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGGCACTATGCTGTGCGCTCTGATTCTCTGGTCTGGCCTCCTGGGGGCTGCCAGGGCCAGCCCCATCT
CAGTTCCCCGTGAGTGTGCCAAGGGTTCGGAGGTATGGTGTCAGGACCTGCAGGCAGCTGCAAAGTGTCG
GGCCGTGAGGCACTGCCAGAGTGCTGTCTGGAACAAGCCCACAGTCAAGTCCCTGCCCTGCAGTGTGTGC
CAGGATGTGGCCGCGGCTGCTGGCAATGGGGTGAACCCAGGTGCTACAGAGTCGGATATTTTGACATCAG
TAATGAAGACCTGTGAGTGGCTTCCAAGCCAGGAGTCTTCAGCTAAGTGCAAGTGGATGGTGAACAACCA
CAGCGCAGCTGTCCTGAGCATGCTCAGTGGCGCTCAGGAGACTGACCTGGCTTCTGTGTGCACTGCGCTC
ACCCTCTGTGAACCATTACAGAGGCACCTAGCTGAGACTACCTCGGAGAGACCGCTGACCCAGGAGGATG
CAAATGAGGTGATGGCCCCATTCTTATCCAACGGGGCGTTGAGCTTCCACCCATCACAGATGCCTGAAGG
TGCTGTGTGTCATGATTGTGTCCAGCTGATCTCCTTGCTCCAGGATGCTCTAGAGTCTAATTTGACCTTG
GCAGAGGTAACTGTCCAGAATCAGTGTCAGTCCATGGGGCCTGGCCTGGCTGCCCTCTGCGAGAACTACA
TCCACCGGCAGTTTGTCCCTGCTAAGCAAACATTGCAGGGTCTCCCCCCACAGGAGGTCTGCAGGAAGGG
GGGCTTCTGTGAGAGAGAGTCTGCCCACTGGCTGACTCGAGTGGCCGCTGTGGATGGAGTCCCCTCTCTG
GAGATGGAGATGCCGAGGACGAATGAGTTGCAGATGCAGTTGGGCCTGACGTGCGACGTGTGCTTGAACT
TGGTCCAGGAGCTGGACAAGTGGCTTGTGACCAACAGCACAGAAGCTCTCATCAGCCACACACTGGAGCG
AGTGTGCACCGTAGTGCCCGAGCCTCTAGTCCAACAGTGCATCACCCTGGTAGACACCTACAGCCCTGAA
TTGGTGCAGCTCATGTCCAAAGTCACCCCAGAGAAAGTATGTGAGACCATCAAGCTGTGTGGCAGCAAAA
GGCGGGCCAGGTCCATCTCCAGGGCTGTGGCAACCACACCATCCCTGCCGGTGGATGAGGAAAACCAGGG
CAGCTTCTGCCAAGGGTGCAAAAGGCTGCTGGGCATGTCTTCCCAGAATCTGGACCACAAGAGCACCAAG
CGGGACATTCTGAATGCCTTCAAAGGTGGCTGCCGGATCCTGCCGTTGCCTTATGTGATGCAGTGCAACC
GTTTTGTGGCCGAGTATGAACCTGTGCTCATAGAGAGCCTCAAGTTCATGATGAACCCCACGGACCTATG
CAAGAAGATGGGGGCCTGCCACGGCCCTAAGACTCCACTTCTAGGCACAGATCAGTGCGTCATGGGCCCC
AGCTTCTGGTGCAAGAGCCCAGAGGCCGCTGAAATGTGTAATGCCCTGGAACACTGCCAGCGCCTCGTGT
GGAAAAAGCCCGTCTCCAAAATCAACGAGCAGCCATGA

Translation (525 aa):
MGTMLCALILWSGLLGAARASPISVPRECAKGSEVWCQDLQAAAKCRAVRHCQSAVWNKPTVKSLPCSVC
QDVAAAAGNGVNPGATESDILTSVMKTCEWLPSQESSAKCKWMVNNHSAAVLSMLSGAQETDLASVCTAL
TLCEPLQRHLAETTSERPLTQEDANEVMAPFLSNGALSFHPSQMPEGAVCHDCVQLISLLQDALESNLTL
AEVTVQNQCQSMGPGLAALCENYIHRQFVPAKQTLQGLPPQEVCRKGGFCERESAHWLTRVAAVDGVPSL
EMEMPRTNELQMQLGLTCDVCLNLVQELDKWLVTNSTEALISHTLERVCTVVPEPLVQQCITLVDTYSPE
LVQLMSKVTPEKVCETIKLCGSKRRARSISRAVATTPSLPVDEENQGSFCQGCKRLLGMSSQNLDHKSTK
RDILNAFKGGCRILPLPYVMQCNRFVAEYEPVLIESLKFMMNPTDLCKKMGACHGPKTPLLGTDQCVMGP
SFWCKSPEAAEMCNALEHCQRLVWKKPVSKINEQP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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