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Report for CCDS39065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39065.1 Public Mus musculus 5 Tacc3 23 108 98 CCDS HistoryNCBI Gene:21335Re-query CCDS DB by CCDS ID:39065.1Re-query CCDS DB by GeneID:21335See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079534.10 ENSMUSP00000078491.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079534.10Link to Ensembl Protein Viewer:ENSMUSP00000078491.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079534Re-query CCDS DB by Protein ID:ENSMUSP00000078491
Original member Current member EBI ENSMUST00000114426.9 ENSMUSP00000110069.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114426.9Link to Ensembl Protein Viewer:ENSMUSP00000110069.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114426Re-query CCDS DB by Protein ID:ENSMUSP00000110069
Original member NCBI NM_001040435.3 NP_001035525.1 Updated not alive Link to Nucleotide Sequence:NM_001040435.3Link to Protein Sequence:NP_001035525.1Re-query CCDS DB by Nucleotide ID:NM_001040435Re-query CCDS DB by Protein ID:NP_001035525
Current member NCBI NM_001040435.4 NP_001035525.1 Accepted alive Link to Nucleotide Sequence:NM_001040435.4Link to Protein Sequence:NP_001035525.1Re-query CCDS DB by Nucleotide ID:NM_001040435Re-query CCDS DB by Protein ID:NP_001035525Link to BLAST:NP_001035525.1

Chromosomal Locations for CCDS 39065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33661223 33661384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33661521 33661645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33663821 33663902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33664267 33664855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33666693 33666745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33667064 33667167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33667963 33668053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33668134 33668235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33668662 33668738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33668818 33668861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33669478 33669647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33671404 33671510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33671665 33671785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33671982 33672047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGAGTCTGCATGTCTTAAATGACGAAAACGTGCCCAATGAAAAGAGTTCACAGTGCCGTGATTTCCAGT
TTTTGCCACCAGAACTTACCGGCAGATCATCTGTTCTTTGTCTGTCACAGAAAGAAAATGTACCACCCCA
GAGCCAGGCTAAGGCCACAAATGTGACGTTCCAGACACCACCTCGGGATCCACAGACACACAGGATCTTA
AGTCCTAACATGACCAATAAGCGTGAGGCTCCTTTTGGATTACAAAATGACCACTGTGTCTTCTTACAGA
AAGAAAACCAGCGGCCTTTAGCCCCAGTGGATGATGCACCTGTGGTTCAAATGGCAGCTGAGATCCTAAG
AGCAGAAGGCGAGTTACAGGAGGGAATCTTGACTTCCTCAAGCCTTTCAGCTTCCACAAGTCTTCTGGAC
AGTGAGCTGGTGACCCCTCCTATCGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAACCTGTCTTGG
AAAGTGAGCTGGTGACCCCTCCTGTTGAGCCAGTGCTGGAGCCTTCCCATCAGGAACTAGAACCTGTCTT
GGAAAGTGAGCTGGTGACCCCTCCTATTGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAACCTGTC
TTGGACAGTGAGCTGGTGACCCCTCCTATTGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAACCTG
TCTTAGAAAGTGAGCTGGTGACCCCTCCTATTGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAACC
TGTCTTGGACAGTGAGCTGGTGACCCCTCCTATTGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAA
CCTGTCTTGGACAGTGAGCTGGTGACCCCTCCTATCGAGCCTTTGCTGGAGCCTTCCCATCAGGGACTAG
AACCTGTCGTGGATCTAAAGGAAGAGAGCTTCAGAGACCCATCAGAAGTCCTAGGTACTGGTGCTGAAGT
GGATTATCTGGAGCAGTTTGGAACTTCCTCGTTTAAGGAGTCGGCCTGGAGGAAGCAGTCTTTGTACGTG
AAATTTGACCCTCTTCTGAAAGACAGCCCTTTGCGGCCAATGCCGGTGGCCCCAATAACAAATAGTACAC
AGGATACAGAGGAGGAGTCTGGTTCTGGAAAGCCGACAGAAGCTGAGCTTGTCAACTTAGATTTCTTGGG
AGATTTGGATGTTCCGGTATCTGCCCCACCCCTGTGTGTCCTTGAGCCTCGAGGTCTCCTTCCTGCTGAG
CCTATTGTGGATGTGCTGAAGTACAGCCAGAAAGACCTGGATGCAGTGGTGAATGTGATGCAGCAGGAGA
ACTTGGAGCTGAAAAGCAAGTATGAGGACCTCAACACAAAATATTTGGAGATGGGGAAGTCCGTTGATGA
GTTTGAGAAGATCGCGTACAAATCATTGGAGGAGGCTGAGAAACAGAGGGAACTAAAGGAAATAGCTGAA
GACAAAATCCAAAAGGTTTTAAAAGAGAGAGACCAACTTAATGCAGACCTGAACTCCATGGAAAAGTCCT
TTTCTGACCTTTTCAAACGGTTTGAGAAGCGGAAGGAAGTGATTGAAGGCTACCAGAAGAATGAAGAGTC
ACTGAAGAAGTATGTTGGGGAATGCATAGTGAAAATTGAAAAAGAAGGCCAGAGGTACCAGGCGCTGAAG
ATCCATGCAGAAGAAAAGCTCAGGCTGGCAAATGAGGAGATCGCCCAGGTACACAGCAAGGCCCAAGCAG
AGGTACTGGCTTTGCAGGCAAGCCTGAGGAAGGCACAAATGCAGAACCACTCGCTGGAGATGACTCTGGA
GCAGAAGACAAAAGAAATTGATGAGCTGACCCGGATCTGTGATGACCTCATCTCTAAGATGGAGAAGATC
TGA

Translation (630 aa):
MSLHVLNDENVPNEKSSQCRDFQFLPPELTGRSSVLCLSQKENVPPQSQAKATNVTFQTPPRDPQTHRIL
SPNMTNKREAPFGLQNDHCVFLQKENQRPLAPVDDAPVVQMAAEILRAEGELQEGILTSSSLSASTSLLD
SELVTPPIEPVLEPSHQGLEPVLESELVTPPVEPVLEPSHQELEPVLESELVTPPIEPVLEPSHQGLEPV
LDSELVTPPIEPVLEPSHQGLEPVLESELVTPPIEPVLEPSHQGLEPVLDSELVTPPIEPVLEPSHQGLE
PVLDSELVTPPIEPLLEPSHQGLEPVVDLKEESFRDPSEVLGTGAEVDYLEQFGTSSFKESAWRKQSLYV
KFDPLLKDSPLRPMPVAPITNSTQDTEEESGSGKPTEAELVNLDFLGDLDVPVSAPPLCVLEPRGLLPAE
PIVDVLKYSQKDLDAVVNVMQQENLELKSKYEDLNTKYLEMGKSVDEFEKIAYKSLEEAEKQRELKEIAE
DKIQKVLKERDQLNADLNSMEKSFSDLFKRFEKRKEVIEGYQKNEESLKKYVGECIVKIEKEGQRYQALK
IHAEEKLRLANEEIAQVHSKAQAEVLALQASLRKAQMQNHSLEMTLEQKTKEIDELTRICDDLISKMEKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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