NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39059.1 Public Mus musculus 5 Babam2 23 108 98 CCDS HistoryNCBI Gene:107976Re-query CCDS DB by CCDS ID:39059.1Re-query CCDS DB by GeneID:107976See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000131995.6 ENSMUSP00000128351.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131995.6Link to Ensembl Protein Viewer:ENSMUSP00000128351.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131995Re-query CCDS DB by Protein ID:ENSMUSP00000128351
Original member Current member NCBI NM_181282.1 NP_851799.1 Accepted alive Link to Nucleotide Sequence:NM_181282.1Link to Protein Sequence:NP_851799.1Re-query CCDS DB by Nucleotide ID:NM_181282Re-query CCDS DB by Protein ID:NP_851799Link to BLAST:NP_851799.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851799.1 245 Q8K3W0-4 245 100% 0 0

Chromosomal Locations for CCDS 39059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31820592 31820672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31831085 31831159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31901055 31901164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32001361 32001460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32004710 32004780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32007235 32007317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32057511 32057664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32084581 32084644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGTTTGAGTACCAGACGCTCCTGGAAGAGCCTCAGTATGGAGAGAACATGGAAATTTATGCTGGAAAGA
AAAACAACTGGACTGGTGAATTTTCAGCTCGTTTTCTATTGAAGTTACCAGTAGATTTCAGCAACATTCC
CACATACCTTCTCAAGGATGTAAATGAAGACCCTGGAGAAGATGTGGCCCTTCTTTCTGTCAGTTTTGAG
GATACTGAAGCTACCCAGGTGTACCCCAAGTTGTACTTGTCACCCCGAATTGAGCATGCACTCGGAGGCT
CCTCTGCTCTTCACATCCCTGCTTTCCCCGGAGGAGGATGTCTCATTGATTATGTGCCTCAAGTGTGCCA
CCTGCTCACCAACAAGGTACAGTATGTGATTCAAGGCTATCACAAAAGAAGAGAGTACATCGCAGCTTTC
CTCAGTCACTTTGGCACAGGTGTCGTGGAATATGATGCAGAAGGCTTCACAAAACTTACTCTGCTGCTGA
TGTGGAAAGACTTTTGTTTTCTTGTCCACATTGACCTGCCCCTGTTTTTCCCTCGAGATCAGCCTACGCT
CACATTTCAGTCAGTCTATCACTTTACCAACAGTGGACAGCTTTACTCCCAAGCACAAAAAAACTACCCA
TACAGCCCCAGATGGGATGGAAATGAAATGGCCAAGAGAGCAAAGGCTTATTTCAAAACCTTTGTCCCTC
AGTTCCAGGAGGCCGCATTTGCCAATGGAAAGCTCTAG

Translation (245 aa):
MFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFE
DTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAF
LSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYP
YSPRWDGNEMAKRAKAYFKTFVPQFQEAAFANGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH