NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39058.1 Public Mus musculus 5 Babam2 23 108 98 CCDS HistoryNCBI Gene:107976Re-query CCDS DB by CCDS ID:39058.1Re-query CCDS DB by GeneID:107976See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071531.11 ENSMUSP00000071462.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071531.11Link to Ensembl Protein Viewer:ENSMUSP00000071462.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071531Re-query CCDS DB by Protein ID:ENSMUSP00000071462
Original member Current member NCBI NM_181280.1 NP_851797.1 Accepted alive Link to Nucleotide Sequence:NM_181280.1Link to Protein Sequence:NP_851797.1Re-query CCDS DB by Nucleotide ID:NM_181280Re-query CCDS DB by Protein ID:NP_851797Link to BLAST:NP_851797.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851797.1 374 Q8K3W0-5 374 100% 0 0

Chromosomal Locations for CCDS 39058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31702091 31702103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31730468 31730555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31730967 31731043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31785578 31785672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31820478 31820672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31831085 31831159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31901055 31901164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32001361 32001460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32004710 32004780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32007235 32007317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32057511 32057664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32084581 32084644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGTGTGCCTGTAATGAATGGTATGGTGTGCCAGATCTAGAGAAAGCATCGTACCTTTGGAGAAAGAAAG
AAAACCATCTGCCACTAGAAAAAGGCCAAAACTGTACATCATTGACTCCTGGACCCAACTGTGACCGCTT
CAAACTGCACATCCCGTACGCTGGGGAGACGTTAAAATGGGACATAATTTTCAATGCTCAGTACCCAGAG
CTGCCTCCTGATTTCATCTTTGGAGAGGATGCTGAGTTTCTGCCAGACCCCTCTGCGCTGCACAACCTTG
CCTCCTGGAACCCTTCAAACCCTGAGTGCCTGTTGCTCGTGGTGAAGGAGCTGGTGCAGCAGTACCACCA
GTTCCAGTGCGGCCGCCTCCGTGAGAGCTCGCGCCTCATGTTTGAGTACCAGACGCTCCTGGAAGAGCCT
CAGTATGGAGAGAACATGGAAATTTATGCTGGAAAGAAAAACAACTGGACTGGTGAATTTTCAGCTCGTT
TTCTATTGAAGTTACCAGTAGATTTCAGCAACATTCCCACATACCTTCTCAAGGATGTAAATGAAGACCC
TGGAGAAGATGTGGCCCTTCTTTCTGTCAGTTTTGAGGATACTGAAGCTACCCAGGTGTACCCCAAGTTG
TACTTGTCACCCCGAATTGAGCATGCACTCGGAGGCTCCTCTGCTCTTCACATCCCTGCTTTCCCCGGAG
GAGGATGTCTCATTGATTATGTGCCTCAAGTGTGCCACCTGCTCACCAACAAGGTACAGTATGTGATTCA
AGGCTATCACAAAAGAAGAGAGTACATCGCAGCTTTCCTCAGTCACTTTGGCACAGGTGTCGTGGAATAT
GATGCAGAAGGCTTCACAAAACTTACTCTGCTGCTGATGTGGAAAGACTTTTGTTTTCTTGTCCACATTG
ACCTGCCCCTGTTTTTCCCTCGAGATCAGCCTACGCTCACATTTCAGTCAGTCTATCACTTTACCAACAG
TGGACAGCTTTACTCCCAAGCACAAAAAAACTACCCATACAGCCCCAGATGGGATGGAAATGAAATGGCC
AAGAGAGCAAAGGCTTATTTCAAAACCTTTGTCCCTCAGTTCCAGGAGGCCGCATTTGCCAATGGAAAGC
TCTAG

Translation (374 aa):
MCACNEWYGVPDLEKASYLWRKKENHLPLEKGQNCTSLTPGPNCDRFKLHIPYAGETLKWDIIFNAQYPE
LPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKELVQQYHQFQCGRLRESSRLMFEYQTLLEEP
QYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKL
YLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEY
DAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMA
KRAKAYFKTFVPQFQEAAFANGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH