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Report for CCDS3901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3901.1 Public Homo sapiens 5 SLC45A2 24 110 108 CCDS HistoryNCBI Gene:51151Re-query CCDS DB by CCDS ID:3901.1Re-query CCDS DB by GeneID:51151See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3901.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296589.9 ENSP00000296589.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296589.9Link to Ensembl Protein Viewer:ENSP00000296589.4Re-query CCDS DB by Nucleotide ID:ENST00000296589Re-query CCDS DB by Protein ID:ENSP00000296589
Original member Current member NCBI NM_016180.5 NP_057264.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016180.5Link to Protein Sequence:NP_057264.4Re-query CCDS DB by Nucleotide ID:NM_016180Re-query CCDS DB by Protein ID:NP_057264Link to BLAST:NP_057264.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057264.4 530 Q9UMX9-1 530 100% 0 0

Chromosomal Locations for CCDS 3901.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33944648 33944872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33947163 33947374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33951554 33951677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33954361 33954504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33963691 33964016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33982236 33982412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33984199 33984583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGGTAGCAACAGTGGGCAGGCTGGCCGCCACATCTATAAATCCCTAGCTGATGATGGCCCCTTTGACT
CTGTGGAGCCGCCTAAAAGACCCACCAGCAGACTCATCATGCACAGCATGGCCATGTTCGGAAGAGAGTT
CTGCTACGCGGTGGAGGCAGCGTATGTGACCCCAGTCCTGCTCAGCGTAGGTCTGCCCAGCAGCCTGTAC
AGCATTGTGTGGTTCCTCAGCCCCATCCTGGGATTCCTGCTGCAGCCCGTGGTCGGATCGGCCAGCGACC
ACTGCCGGTCCAGGTGGGGCCGCCGGAGACCCTACATCCTCACCCTGGGAGTCATGATGCTCGTGGGCAT
GGCTCTGTACCTCAATGGGGCTACTGTTGTAGCAGCTTTGATTGCTAACCCAAGGAGGAAGCTGGTTTGG
GCCATAAGTGTCACCATGATAGGTGTCGTTCTCTTTGATTTTGCTGCCGACTTCATTGATGGGCCCATCA
AAGCCTACTTATTTGATGTCTGCTCCCATCAGGACAAGGAGAAGGGCCTCCACTACCATGCCCTCTTCAC
AGGTTTTGGAGGTGCCCTGGGTTACCTTTTGGGTGCTATAGACTGGGCCCATCTGGAGCTGGGAAGACTG
TTGGGTACAGAATTCCAGGTCATGTTCTTCTTCTCTGCATTGGTGCTCACTTTGTGTTTTACTGTTCATC
TGTGCAGTATCTCTGAAGCCCCACTTACAGAGGTTGCAAAGGGCATTCCCCCACAGCAAACCCCTCAGGA
CCCTCCATTGTCATCAGATGGAATGTACGAGTATGGTTCTATCGAGAAAGTTAAAAATGGTTACGTAAAT
CCAGAGCTGGCAATGCAGGGAGCAAAAAACAAAAATCATGCTGAACAGACTCGCAGGGCAATGACATTAA
AGTCACTGCTGAGAGCACTGGTGAACATGCCTCCTCACTACCGCTACCTTTGCATCAGCCACCTCATTGG
ATGGACAGCCTTCCTGTCCAACATGCTGTTCTTCACAGATTTCATGGGCCAGATTGTGTACCGCGGGGAT
CCCTATAGTGCACACAACTCCACAGAGTTTCTCATCTACGAAAGAGGAGTCGAGGTTGGATGTTGGGGCT
TGTGCATCAACTCCGTGTTTTCCTCACTTTATTCTTACTTTCAGAAAGTTTTGGTATCCTACATTGGATT
AAAGGGTCTTTACTTCACGGGATATTTGCTGTTTGGCCTGGGGACGGGATTTATTGGGCTCTTCCCGAAT
GTCTACTCCACCCTGGTCCTGTGCAGCCTGTTTGGTGTAATGTCCAGCACCCTGTACACTGTGCCCTTTA
ACCTCATTACTGAGTACCACCGCGAGGAAGAAAAGGAGAGGCAGCAGGCCCCAGGAGGGGACCCAGACAA
CAGCGTGAGAGGGAAGGGCATGGACTGCGCCACCCTCACATGCATGGTGCAGCTGGCTCAGATCCTGGTC
GGAGGTGGCCTGGGCTTTCTGGTCAACACAGCCGGGACCGTTGTCGTCGTGGTGATCACAGCGTCTGCGG
TGGCACTGATAGGCTGTTGCTTTGTCGCTCTCTTTGTTAGATATGTGGATTAG

Translation (530 aa):
MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVLLSVGLPSSLY
SIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALYLNGATVVAALIANPRRKLVW
AISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGGALGYLLGAIDWAHLELGRL
LGTEFQVMFFFSALVLTLCFTVHLCSISEAPLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVN
PELAMQGAKNKNHAEQTRRAMTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGD
PYSAHNSTEFLIYERGVEVGCWGLCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN
VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKERQQAPGGDPDNSVRGKGMDCATLTCMVQLAQILV
GGGLGFLVNTAGTVVVVVITASAVALIGCCFVALFVRYVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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