CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS38936.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
38936.1 |
Public |
Mus musculus |
4 |
Padi6 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:242726](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:38936.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:242726](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 38936.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000038749.10 |
ENSMUSP00000044044.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000038749.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000044044.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000038749](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000044044](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_153106.2 |
NP_694746.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_153106.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_694746.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_153106](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_694746](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_694746.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_694746.2 |
682 |
Q8K3V4 |
682 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 38936.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2049 nt): ATGTCTTTTCAGAACTCACTCAGCCTGTCTCTGGTCAATCCCACCCATGCCCTCTGCATGGTAGGCATGG AAATCACCTTGGACATCAGCAAGTGTGCACCAGACAAGTGCAAGTCTTTCACCATCCGTGGTTCCCCCAG GATCTTGATCCACATCTCTAGCTCCGTCATCGCTGGCAAAGAGGACACTGTGGTCTGGAGGTCAATGAAC CATCCCACAGTGGCATTGGTGAGGATGGTGGCGCCCAGCCCCACTGTGGATGAAGACAAGGTGCTGGTCT CCTACTTCTGTCCTGACCAAGAAGTCCCCACGGCCACAGCTGTGCTGTTTCTCACCGGCATCGAGATCTC CCTGGAGGCAGACATCTATCGAGATGGACAACTGGACATGCCAAGTGATAAGCAAGCTAAGAAAAAATGG ATGTGGGGTATGAACGGCTGGGGAGCCATCCTGCTTGTGAATTGTAGCCCTAATGCTGTGGGCCAGCCTG ATGAACAGTCCTTTCAGGAGGGCCCCAGAGAAATACAGAACCTGTCTCAGATGAATGTAACTGTGGAGGG CCCCACCAGCATCCTACAGAATTACCAGTTGATCCTACATACCTCCGAAGAAGAGGCGAAGAAGACAAGA GTCTACTGGTCTCAGAGAGGCTCCTCTGCGTATGAACTGGTGGTGGGACCCAACAAGCCTGTCTATCTCC TGCCTACCTTTGAGAACCGTAGGAAAGAGGCTTTCTACGTAGAAGCCACGGAATTCCCATCTCCCAGCTT CTCGGGCCTGATCTCCTTGTCACTCTCCCTAGTAGAAAAGGCTCACGACGAGTGCATCCCAGAGATTCCG CTCTATAAGGATACAGTGATGTTCCGGGTGGCACCTTATATCTTCATGCCCAGCACCCAGATGCCTCTAG AGGTTTACCTGTGCAGGGAGCTACAGCTGCAAGGCTTTGTGGACTCAGTGACCAAGCTGAGCGAGAAGAG CAAAGTGCAGGTGGTAAAGGTCTATGAGGACCCCAACCGCCAGAGCAAGTGGCTCCAGGACGAGATGGCT TTCTGCTATACTCAGGCTCCTCACAAGACGGTGTCATTGATCCTTGACACCCCAAGGGTTTCCAAGCTGG AAGACTTCCCCATGAAATACACACTGACCCCTGGCTCTGGCTACCTGATCCGACAAACTGAGGACCACCG GGTGGCTAGCCTGGATTCCATCGGGAACCTGATGGTATCTCCGCCTGTCAAGGCTCAGGGCAAAGACTAC CCTCTAGGGAGGGTCCTCATTGGTGGCAGCTTTTACCCCAGCTCTGAGGGCCGGGACATGAACAAGGGCC TGCGAGAATTCGTGTATGCCCAGCAGGTGCAGGCCCCTGTGGAACTCTTCTCGGACTGGCTGATGACCGG TCACATGGATCAATTCATGTGCTTTGTCCCTACCAATGATAAAAACAACGACCAGAAGGACTTCCGCCTG CTGCTGGCCAGCCCCAGTGCCTGCTTTGAGCTGTTCGAACAGAAGCAGAAGGAAGGCTATGGGAACGTGA CCCTGTTTGAAGACATTGGAGCAGAACAGCTCCTTTCTAATGGGAGGGAGAGCAAAACTATTTCCCAAAT CCTGGCTGACAAGAGTTTTCGAGAGCAGAACACCTATGTTGAGAAGTGTATCAGCCTGAACCGCACCCTC CTGAAGACAGAACTGGGATTGGAGGACAAGGACATCATCCTGATCCCGCAGCTCTTCTGCCTGGAGCAGC TGACGAATGTCCCCTCCAACCAGCAGAGCACCAAACTCTTCGCGAGGCCGTACTTCCCCGACATGCTGCA GATAATCGTGTTGGGCAAGAACCTTGGAATCCCCAAGCCCTTTGGGCCCAAAATCAATGGCACCTGCTGC CTAGAAGAGAAAGTGTGTGGATTACTGGAGCCCCTGGGTCTCAAGTGCACCTTCATTGATGATTTTGACT GCTACCTGGCCAACATAGGGGACGTCTGTGCCAGTGCCATCATAAACAGGGTGCCATTTGCATTCAAGTG GTGGAAGATGACCCCATAA
Translation (682 aa): MSFQNSLSLSLVNPTHALCMVGMEITLDISKCAPDKCKSFTIRGSPRILIHISSSVIAGKEDTVVWRSMN HPTVALVRMVAPSPTVDEDKVLVSYFCPDQEVPTATAVLFLTGIEISLEADIYRDGQLDMPSDKQAKKKW MWGMNGWGAILLVNCSPNAVGQPDEQSFQEGPREIQNLSQMNVTVEGPTSILQNYQLILHTSEEEAKKTR VYWSQRGSSAYELVVGPNKPVYLLPTFENRRKEAFYVEATEFPSPSFSGLISLSLSLVEKAHDECIPEIP LYKDTVMFRVAPYIFMPSTQMPLEVYLCRELQLQGFVDSVTKLSEKSKVQVVKVYEDPNRQSKWLQDEMA FCYTQAPHKTVSLILDTPRVSKLEDFPMKYTLTPGSGYLIRQTEDHRVASLDSIGNLMVSPPVKAQGKDY PLGRVLIGGSFYPSSEGRDMNKGLREFVYAQQVQAPVELFSDWLMTGHMDQFMCFVPTNDKNNDQKDFRL LLASPSACFELFEQKQKEGYGNVTLFEDIGAEQLLSNGRESKTISQILADKSFREQNTYVEKCISLNRTL LKTELGLEDKDIILIPQLFCLEQLTNVPSNQQSTKLFARPYFPDMLQIIVLGKNLGIPKPFGPKINGTCC LEEKVCGLLEPLGLKCTFIDDFDCYLANIGDVCASAIINRVPFAFKWWKMTP
|