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Report for CCDS38936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38936.1 Public Mus musculus 4 Padi6 23 108 98 CCDS HistoryNCBI Gene:242726Re-query CCDS DB by CCDS ID:38936.1Re-query CCDS DB by GeneID:242726See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038749.10 ENSMUSP00000044044.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038749.10Link to Ensembl Protein Viewer:ENSMUSP00000044044.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038749Re-query CCDS DB by Protein ID:ENSMUSP00000044044
Original member Current member NCBI NM_153106.2 NP_694746.2 Accepted alive Link to Nucleotide Sequence:NM_153106.2Link to Protein Sequence:NP_694746.2Re-query CCDS DB by Nucleotide ID:NM_153106Re-query CCDS DB by Protein ID:NP_694746Link to BLAST:NP_694746.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694746.2 682 Q8K3V4 682 100% 0 0

Chromosomal Locations for CCDS 38936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140727576 140727809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140728867 140729028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140729709 140729779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140730912 140731035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140731122 140731278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140732242 140732396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140732633 140732740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140734264 140734375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140735383 140735486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140735676 140735851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140737271 140737396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140739077 140739185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140740067 140740134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140741002 140741074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140741758 140741935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140742489 140742580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGTCTTTTCAGAACTCACTCAGCCTGTCTCTGGTCAATCCCACCCATGCCCTCTGCATGGTAGGCATGG
AAATCACCTTGGACATCAGCAAGTGTGCACCAGACAAGTGCAAGTCTTTCACCATCCGTGGTTCCCCCAG
GATCTTGATCCACATCTCTAGCTCCGTCATCGCTGGCAAAGAGGACACTGTGGTCTGGAGGTCAATGAAC
CATCCCACAGTGGCATTGGTGAGGATGGTGGCGCCCAGCCCCACTGTGGATGAAGACAAGGTGCTGGTCT
CCTACTTCTGTCCTGACCAAGAAGTCCCCACGGCCACAGCTGTGCTGTTTCTCACCGGCATCGAGATCTC
CCTGGAGGCAGACATCTATCGAGATGGACAACTGGACATGCCAAGTGATAAGCAAGCTAAGAAAAAATGG
ATGTGGGGTATGAACGGCTGGGGAGCCATCCTGCTTGTGAATTGTAGCCCTAATGCTGTGGGCCAGCCTG
ATGAACAGTCCTTTCAGGAGGGCCCCAGAGAAATACAGAACCTGTCTCAGATGAATGTAACTGTGGAGGG
CCCCACCAGCATCCTACAGAATTACCAGTTGATCCTACATACCTCCGAAGAAGAGGCGAAGAAGACAAGA
GTCTACTGGTCTCAGAGAGGCTCCTCTGCGTATGAACTGGTGGTGGGACCCAACAAGCCTGTCTATCTCC
TGCCTACCTTTGAGAACCGTAGGAAAGAGGCTTTCTACGTAGAAGCCACGGAATTCCCATCTCCCAGCTT
CTCGGGCCTGATCTCCTTGTCACTCTCCCTAGTAGAAAAGGCTCACGACGAGTGCATCCCAGAGATTCCG
CTCTATAAGGATACAGTGATGTTCCGGGTGGCACCTTATATCTTCATGCCCAGCACCCAGATGCCTCTAG
AGGTTTACCTGTGCAGGGAGCTACAGCTGCAAGGCTTTGTGGACTCAGTGACCAAGCTGAGCGAGAAGAG
CAAAGTGCAGGTGGTAAAGGTCTATGAGGACCCCAACCGCCAGAGCAAGTGGCTCCAGGACGAGATGGCT
TTCTGCTATACTCAGGCTCCTCACAAGACGGTGTCATTGATCCTTGACACCCCAAGGGTTTCCAAGCTGG
AAGACTTCCCCATGAAATACACACTGACCCCTGGCTCTGGCTACCTGATCCGACAAACTGAGGACCACCG
GGTGGCTAGCCTGGATTCCATCGGGAACCTGATGGTATCTCCGCCTGTCAAGGCTCAGGGCAAAGACTAC
CCTCTAGGGAGGGTCCTCATTGGTGGCAGCTTTTACCCCAGCTCTGAGGGCCGGGACATGAACAAGGGCC
TGCGAGAATTCGTGTATGCCCAGCAGGTGCAGGCCCCTGTGGAACTCTTCTCGGACTGGCTGATGACCGG
TCACATGGATCAATTCATGTGCTTTGTCCCTACCAATGATAAAAACAACGACCAGAAGGACTTCCGCCTG
CTGCTGGCCAGCCCCAGTGCCTGCTTTGAGCTGTTCGAACAGAAGCAGAAGGAAGGCTATGGGAACGTGA
CCCTGTTTGAAGACATTGGAGCAGAACAGCTCCTTTCTAATGGGAGGGAGAGCAAAACTATTTCCCAAAT
CCTGGCTGACAAGAGTTTTCGAGAGCAGAACACCTATGTTGAGAAGTGTATCAGCCTGAACCGCACCCTC
CTGAAGACAGAACTGGGATTGGAGGACAAGGACATCATCCTGATCCCGCAGCTCTTCTGCCTGGAGCAGC
TGACGAATGTCCCCTCCAACCAGCAGAGCACCAAACTCTTCGCGAGGCCGTACTTCCCCGACATGCTGCA
GATAATCGTGTTGGGCAAGAACCTTGGAATCCCCAAGCCCTTTGGGCCCAAAATCAATGGCACCTGCTGC
CTAGAAGAGAAAGTGTGTGGATTACTGGAGCCCCTGGGTCTCAAGTGCACCTTCATTGATGATTTTGACT
GCTACCTGGCCAACATAGGGGACGTCTGTGCCAGTGCCATCATAAACAGGGTGCCATTTGCATTCAAGTG
GTGGAAGATGACCCCATAA

Translation (682 aa):
MSFQNSLSLSLVNPTHALCMVGMEITLDISKCAPDKCKSFTIRGSPRILIHISSSVIAGKEDTVVWRSMN
HPTVALVRMVAPSPTVDEDKVLVSYFCPDQEVPTATAVLFLTGIEISLEADIYRDGQLDMPSDKQAKKKW
MWGMNGWGAILLVNCSPNAVGQPDEQSFQEGPREIQNLSQMNVTVEGPTSILQNYQLILHTSEEEAKKTR
VYWSQRGSSAYELVVGPNKPVYLLPTFENRRKEAFYVEATEFPSPSFSGLISLSLSLVEKAHDECIPEIP
LYKDTVMFRVAPYIFMPSTQMPLEVYLCRELQLQGFVDSVTKLSEKSKVQVVKVYEDPNRQSKWLQDEMA
FCYTQAPHKTVSLILDTPRVSKLEDFPMKYTLTPGSGYLIRQTEDHRVASLDSIGNLMVSPPVKAQGKDY
PLGRVLIGGSFYPSSEGRDMNKGLREFVYAQQVQAPVELFSDWLMTGHMDQFMCFVPTNDKNNDQKDFRL
LLASPSACFELFEQKQKEGYGNVTLFEDIGAEQLLSNGRESKTISQILADKSFREQNTYVEKCISLNRTL
LKTELGLEDKDIILIPQLFCLEQLTNVPSNQQSTKLFARPYFPDMLQIIVLGKNLGIPKPFGPKINGTCC
LEEKVCGLLEPLGLKCTFIDDFDCYLANIGDVCASAIINRVPFAFKWWKMTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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