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Report for CCDS3892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3892.1 Public Homo sapiens 5 CDH10 24 110 108 CCDS HistoryNCBI Gene:1008Re-query CCDS DB by CCDS ID:3892.1Re-query CCDS DB by GeneID:1008See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264463.8 ENSP00000264463.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264463.8Link to Ensembl Protein Viewer:ENSP00000264463.4Re-query CCDS DB by Nucleotide ID:ENST00000264463Re-query CCDS DB by Protein ID:ENSP00000264463
Original member Current member NCBI NM_006727.5 NP_006718.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006727.5Link to Protein Sequence:NP_006718.2Re-query CCDS DB by Nucleotide ID:NM_006727Re-query CCDS DB by Protein ID:NP_006718Link to BLAST:NP_006718.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006718.2 788 Q9Y6N8 788 100% 0 0

Chromosomal Locations for CCDS 3892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24487663 24488153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24491576 24491827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24492817 24492925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24498398 24498519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24505112 24505248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24509566 24509819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24511327 24511514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24535112 24535279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24535703 24535822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24537380 24537674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24593260 24593490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGACAATACATCAATTTTTGCTACTGTTTCTATTCTGGGTATGCCTGCCACATTTCTGCTCTCCAGAAA
TAATGTTCAGAAGGACGCCTGTGCCACAGCAAAGAATTTTAAGTTCACGTGTACCAAGGAGTGATGGCAA
AATTCTCCATCGTCAAAAACGTGGTTGGATGTGGAATCAATTTTTCTTACTTGAAGAATATACAGGATCT
GATTATCAGTACGTAGGCAAGCTACATTCAGACCAAGATAAAGGAGATGGATCACTCAAATATATCTTAT
CTGGAGATGGAGCTGGTACTCTTTTTATTATTGATGAAAAAACAGGTGATATTCATGCCACAAGGCGAAT
TGATAGGGAGGAAAAGGCCTTTTATACTCTACGCGCACAAGCTATTAACAGAAGAACTCTGAGGCCAGTA
GAGCCAGAGTCAGAGTTTGTGATCAAAATTCATGATATCAATGACAATGAGCCAACGTTCCCAGAAGAAA
TCTATACAGCTAGTGTTCCCGAAATGTCTGTTGTAGGTACTTCTGTGGTGCAAGTCACAGCTACAGATGC
CGATGACCCTTCATATGGGAACAGCGCCAGAGTCATTTACAGCATACTTCAAGGGCAGCCCTATTTCTCT
GTGGAGCCTGAAACAGGTATCATCAGGACTGCTTTACCGAACATGAACAGAGAAAACAGAGAGCAATACC
AAGTGGTCATCCAGGCCAAAGACATGGGCGGCCAGATGGGAGGCTTATCGGGGACAACCACTGTGAACAT
CACGCTGACAGATGTCAATGACAACCCACCACGTTTCCCCCAGAACACTATTCATCTTCGAGTTCTTGAA
TCCTCCCCAGTTGGCACAGCCATTGGAAGTGTCAAAGCAACTGATGCTGACACTGGGAAAAATGCTGAAG
TAGAATACCGAATTATTGATGGTGACGGTACTGATATGTTTGACATCGTGACTGAGAAGGACACACAGGA
AGGCATCATCACTGTGAAAAAGCCACTCGACTATGAGAGCCGAAGACTTTATACTCTGAAAGTCGAAGCA
GAAAACACCCATGTAGATCCCCGTTTTTATTACCTAGGACCATTTAAAGATACTACCATAGTGAAAATCT
CTATAGAAGATGTGGATGAACCTCCTGTTTTTAGTAGGTCCTCCTATCTGTTTGAAGTTCATGAAGATAT
TGAAGTGGGCACAATCATTGGTACTGTAATGGCAAGGGACCCAGATTCTATTTCCAGCCCCATTAGATTT
TCCTTGGATCGCCATACTGACCTTGACAGAATCTTTAACATTCATTCAGGAAATGGATCTCTTTATACAT
CAAAACCTCTTGACCGTGAACTATCTCAGTGGCATAATCTTACTGTTATTGCTGCTGAAATCAACAATCC
CAAAGAGACAACACGCGTGGCTGTTTTTGTGAGAATTTTGGATGTTAATGACAATGCCCCACAGTTTGCT
GTGTTCTATGACACTTTTGTATGTGAAAATGCCAGACCAGGGCAGCTAATACAGACTATAAGTGCAGTAG
ACAAAGATGACCCTTTAGGTGGACAGAAATTTTTTTTCAGTTTAGCTGCTGTCAATCCAAACTTCACAGT
ACAGGATAATGAAGATAATACTGCCAGAATCTTAACCAGAAAAAATGGATTCAATAGACATGAAATCAGT
ACCTATCTCTTGCCTGTGGTGATATCAGACAATGATTACCCAATTCAGAGCAGCACAGGCACACTGACCA
TTCGAGTGTGTGCTTGTGACAGCCAAGGCAACATGCAATCCTGCAGTGCTGAAGCCCTGCTCCTCCCTGC
CGGCCTCAGCACTGGGGCCTTGATCGCCATCCTCCTCTGCATCATCATTCTACTGGTTATAGTAGTACTG
TTTGCAGCTCTGAAAAGACAGCGAAAAAAAGAGCCTCTGATCTTGTCAAAAGAAGATATCAGAGACAACA
TTGTGAGCTATAACGATGAGGGTGGTGGAGAGGAGGACACCCAGGCCTTTGATATCGGCACCCTGAGGAA
TCCTGCAGCCATTGAGGAAAAAAAGCTCCGGCGAGATATTATTCCAGAAACGTTATTTATTCCTCGGAGG
ACTCCTACAGCTCCAGATAACACGGACGTCCGGGATTTCATTAATGAAAGGCTAAAAGAGCATGATCTTG
ACCCCACCGCACCCCCCTACGACTCACTTGCAACCTATGCCTATGAAGGAAATGATTCCATTGCTGAATC
TCTGAGTTCATTAGAATCAGGTACTACTGAAGGAGACCAAAACTACGATTACCTCCGAGAATGGGGCCCT
CGGTTTAATAAGCTAGCAGAAATGTATGGTGGTGGGGAAAGTGACAAAGACTCTTAA

Translation (788 aa):
MTIHQFLLLFLFWVCLPHFCSPEIMFRRTPVPQQRILSSRVPRSDGKILHRQKRGWMWNQFFLLEEYTGS
DYQYVGKLHSDQDKGDGSLKYILSGDGAGTLFIIDEKTGDIHATRRIDREEKAFYTLRAQAINRRTLRPV
EPESEFVIKIHDINDNEPTFPEEIYTASVPEMSVVGTSVVQVTATDADDPSYGNSARVIYSILQGQPYFS
VEPETGIIRTALPNMNRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQNTIHLRVLE
SSPVGTAIGSVKATDADTGKNAEVEYRIIDGDGTDMFDIVTEKDTQEGIITVKKPLDYESRRLYTLKVEA
ENTHVDPRFYYLGPFKDTTIVKISIEDVDEPPVFSRSSYLFEVHEDIEVGTIIGTVMARDPDSISSPIRF
SLDRHTDLDRIFNIHSGNGSLYTSKPLDRELSQWHNLTVIAAEINNPKETTRVAVFVRILDVNDNAPQFA
VFYDTFVCENARPGQLIQTISAVDKDDPLGGQKFFFSLAAVNPNFTVQDNEDNTARILTRKNGFNRHEIS
TYLLPVVISDNDYPIQSSTGTLTIRVCACDSQGNMQSCSAEALLLPAGLSTGALIAILLCIIILLVIVVL
FAALKRQRKKEPLILSKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPAAIEEKKLRRDIIPETLFIPRR
TPTAPDNTDVRDFINERLKEHDLDPTAPPYDSLATYAYEGNDSIAESLSSLESGTTEGDQNYDYLREWGP
RFNKLAEMYGGGESDKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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