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Report for CCDS3886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3886.1 Public Homo sapiens 5 ZNF622 24 110 108 CCDS HistoryNCBI Gene:90441Re-query CCDS DB by CCDS ID:3886.1Re-query CCDS DB by GeneID:90441See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308683.3 ENSP00000310042.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308683.3Link to Ensembl Protein Viewer:ENSP00000310042.2Re-query CCDS DB by Nucleotide ID:ENST00000308683Re-query CCDS DB by Protein ID:ENSP00000310042
Original member Current member NCBI NM_033414.3 NP_219482.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033414.3Link to Protein Sequence:NP_219482.1Re-query CCDS DB by Nucleotide ID:NM_033414Re-query CCDS DB by Protein ID:NP_219482Link to BLAST:NP_219482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_219482.1 477 Q969S3 477 100% 0 0

Chromosomal Locations for CCDS 3886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 16451657 16451784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16453013 16453156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16458517 16458629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16463108 16463270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16463482 16463742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16465041 16465665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGCGACGTACACCTGCATAACTTGCCGGGTGGCGTTCCGCGACGCGGACATGCAGCGGGCCCACTATA
AGACGGACTGGCACCGCTACAACCTGCGGCGGAAGGTGGCCAGCATGGCCCCAGTGACCGCCGAGGGCTT
CCAGGAGCGAGTGCGGGCGCAGCGGGCCGTCGCGGAGGAGGAGAGCAAGGGCTCGGCCACCTACTGCACC
GTTTGCAGTAAGAAGTTTGCCTCTTTCAACGCCTACGAGAACCACCTCAAGTCCCGGCGTCACGTTGAGC
TGGAGAAGAAGGCCGTGCAGGCAGTGAATCGGAAAGTGGAGATGATGAATGAAAAGAACTTGGAGAAAGG
ACTGGGCGTGGACAGTGTGGACAAGGATGCCATGAACGCGGCCATCCAGCAGGCCATCAAGGCCCAGCCG
TCCATGTCTCCCAAGAAGGCGCCCCCAGCGCCTGCAAAGGAGGCCAGGAATGTCGTGGCCGTGGGTACTG
GTGGCCGTGGGACCCACGACCGAGACCCGAGTGAGAAACCACCCCGGCTCCAGTGGTTTGAACAGCAGGC
GAAGAAGTTGGCAAAGCAGCAGGAGGAGGACAGCGAGGAGGAGGAAGAGGACCTGGATGGAGACGATTGG
GAAGATATTGATTCTGATGAAGAATTGGAATGTGAGGATACTGAAGCAATGGACGATGTGGTGGAGCAGG
ATGCAGAGGAGGAAGAGGCTGAGGAAGGCCCACCCCTTGGTGCCATCCCTATCACGGACTGCTTATTTTG
TTCCCATCATTCCAGCTCGCTGATGAAGAATGTGGCTCACATGACCAAAGACCACAGTTTCTTTATTCCT
GATATAGAATATCTTTCAGATATTAAGGGACTGATTAAATACTTGGGAGAGAAAGTTGGTGTTGGCAAGA
TTTGCTTGTGGTGCAACGAGAAAGGGAAGTCCTTCTACTCCACAGAAGCTGTACAGGCACATATGAATGA
CAAAAGCCACTGTAAGCTCTTCACAGATGGCGATGCTGCTTTGGAATTTGCAGACTTCTATGATTTTAGG
AGTAGCTATCCAGATCACAAGGAAGGGGAGGACCCCAATAAGGCTGAGGAGTTGCCCTCAGAAAAGAACT
TGGAATATGATGATGAAACCATGGAATTGATTCTGCCTTCTGGTGCCAGAGTGGGTCATCGCTCCTTGAT
GAGATACTACAAACAGCGATTTGGCTTGTCAAGAGCTGTGGCAGTTGCCAAAAATCGGAAGGCCGTGGGC
CGAGTACTTCAGCAGTACAGAGCCCTGGGATGGACTGGCAGCACAGGAGCGGCTCTTATGCGAGAGCGAG
ACATGCAGTATGTCCAAAGGATGAAATCAAAATGGATGCTGAAGACAGGAATGAAGAACAATGCCACCAA
GCAGATGCACTTTCGGGTCCAAGTGAGATTCTGA

Translation (477 aa):
MATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEEESKGSATYCT
VCSKKFASFNAYENHLKSRRHVELEKKAVQAVNRKVEMMNEKNLEKGLGVDSVDKDAMNAAIQQAIKAQP
SMSPKKAPPAPAKEARNVVAVGTGGRGTHDRDPSEKPPRLQWFEQQAKKLAKQQEEDSEEEEEDLDGDDW
EDIDSDEELECEDTEAMDDVVEQDAEEEEAEEGPPLGAIPITDCLFCSHHSSSLMKNVAHMTKDHSFFIP
DIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFR
SSYPDHKEGEDPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVG
RVLQQYRALGWTGSTGAALMRERDMQYVQRMKSKWMLKTGMKNNATKQMHFRVQVRF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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