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Report for CCDS38828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38828.1 Public Mus musculus 4 Pars2 23 108 98 CCDS HistoryNCBI Gene:230577Re-query CCDS DB by CCDS ID:38828.1Re-query CCDS DB by GeneID:230577See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106781.1 ENSMUSP00000102393.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106781.1Link to Ensembl Protein Viewer:ENSMUSP00000102393.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106781Re-query CCDS DB by Protein ID:ENSMUSP00000102393
Original member Current member NCBI NM_001083887.2 NP_001077356.1 Accepted alive Link to Nucleotide Sequence:NM_001083887.2Link to Protein Sequence:NP_001077356.1Re-query CCDS DB by Nucleotide ID:NM_001083887Re-query CCDS DB by Protein ID:NP_001077356Link to BLAST:NP_001077356.1
Original member Current member NCBI NM_001285783.1 NP_001272712.1 Accepted alive Link to Nucleotide Sequence:NM_001285783.1Link to Protein Sequence:NP_001272712.1Re-query CCDS DB by Nucleotide ID:NM_001285783Re-query CCDS DB by Protein ID:NP_001272712Link to BLAST:NP_001272712.1

Chromosomal Locations for CCDS 38828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106653023 106654558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGTGCTGGGCTAATAGACATGGAAGGATCCACATCTTGGATCCCGTGCTGAGAACCAAGTTAATCGTCA
TCCCACGTGACTCATTTTTCTCCAGGTGCCAGGGTGTCATGGAAGGTCTGCTGACAAGATGCAGAACACT
GTCTGCCTTGGCTGCCTGCAGCCTCCGTCACTGCAGATACATCATCCACAAGTGTTACCATCGTGCGCCC
GGGAGAGGGCAGCGCTTGGTATTATCCCGCATGTTCCAGCCTCAGAACCTTCGGGAAGACCAGGTGCTTT
CTCTGGAGGGCAGAGCTAGCGACCTGACCTGTAAGAGCCAGCGGCTGATGCTGCAAGTGGGCCTGATCCT
TCCAGCCAGCCCTGGCTGTTACCACCTCATGCCCTATACAGTGCGTGCCGTGGAGAAGCTTGTGCGGGTG
ATAGACCAGGAGATGCAGGCCATCGGCGGGCAGAAAATCAACATGCCCAGCCTCAGCCCAGCTGAGCTGT
GGCGGGCCACCAGCCGCTGGGACCTGATGGGCAGGGAGCTGCTGAGACTGAGAGACAGGCACGGCAAAGA
GTACTGCTTGGGACCGACTCATGAGGAAGCGGTTACAGCCCTGGTTGCCTCCCAGAAGAAACTTTCCTAC
AAGCAGCTCCCCTTGTTGTTGTACCAGGTTACAAGGAAGTTTCGGGATGAGCCCAGGCCCCGGTTTGGTC
TTCTCCGTGGCCGGGAGTTCTATATGAAGGACATGTACACCTTTGATTCCTCCTCTGAGGCTGCCCAGGA
AACCTACGGCCTGGTGTGTGATGCTTACTGTAGGCTGTTTGACAGGCTGGGATTGCAATGGATGAAGGCC
AGGGCAGATGTGGGCAGCATCGGGGGCACGATGTCCCATGAATTCCAGCTACCAGTGGACATTGGAGAGG
ACCGCCTTGTGGTCTGTCCCAGCTGCCACTTCTCCGCCAACACAGAGATACTAGACTTGTCACAAAAAAT
CTGCCCTGACTGCCAGGGTCCACTGACAGAAACCAAAGGCATTGAGGTGGGGCACACATTCTACCTTAGT
ACCAAGTACTCTTCCATTTTCAATGCCCTCTTTACCAATGCCCATGGGGAATCTTTGCTGGCTGAAATGG
GGTGCTACGGGCTGGGAGTCACTCGGATCCTGGCTGCAGCCATCGAAGTTCTCTCTACGGAAGACTGCAT
CCGCTGGCCCCGCCTCCTTGCCCCTTACCAAGTCTGTGTCATCCCCCCTAAGAAAGGCAGCAAGGAGACA
GCAGCCACAGAGATTGTGGAGAAGTTATATGATGACATCATGGAGGCTGTGCCCCAGCTCCGAGGGGAGG
TCCTGCTGGACGACAGGACCCACCTGACCATTGGAAACAGACTGAAAGATGCCAACAAGCTTGGCTACCC
CTTTGTGATCATTGCGGGCAAGAGGGCCTTGGAGGACCCAGCACACTTTGAGGTTTGGTCTCAGAACACT
GGTGAGGTGGTCTTCCTCACCAAAGAGGGAGTCATGGAACTACTAACTGGAGTGCATGTTGTCTAG

Translation (511 aa):
MCWANRHGRIHILDPVLRTKLIVIPRDSFFSRCQGVMEGLLTRCRTLSALAACSLRHCRYIIHKCYHRAP
GRGQRLVLSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRV
IDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSY
KQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLGLQWMKA
RADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLS
TKYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVIPPKKGSKET
AATEIVEKLYDDIMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIAGKRALEDPAHFEVWSQNT
GEVVFLTKEGVMELLTGVHVV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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