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Report for CCDS38812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38812.1 Public Mus musculus 4 Cdkn2a 23 108 98 CCDS HistoryNCBI Gene:12578Re-query CCDS DB by CCDS ID:38812.1Re-query CCDS DB by GeneID:12578See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060501.4 ENSMUSP00000061847.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060501.4Link to Ensembl Protein Viewer:ENSMUSP00000061847.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060501Re-query CCDS DB by Protein ID:ENSMUSP00000061847
Original member Current member NCBI NM_001040654.1 NP_001035744.1 Accepted alive Link to Nucleotide Sequence:NM_001040654.1Link to Protein Sequence:NP_001035744.1Re-query CCDS DB by Nucleotide ID:NM_001040654Re-query CCDS DB by Protein ID:NP_001035744Link to BLAST:NP_001035744.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035744.1 168 P51480-1 168 100% 0 0

Chromosomal Locations for CCDS 38812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 89274735 89274774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89276645 89276985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89281986 89282111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGAGTCCGCTGCAGACAGACTGGCCAGGGCGGCGGCCCAGGGCCGTGTGCATGACGTGCGGGCACTGC
TGGAAGCCGGGGTTTCGCCCAACGCCCCGAACTCTTTCGGTCGTACCCCGATTCAGGTGATGATGATGGG
CAACGTTCACGTAGCAGCTCTTCTGCTCAACTACGGTGCAGATTCGAACTGCGAGGACCCCACTACCTTC
TCCCGCCCGGTGCACGACGCAGCGCGGGAAGGCTTCCTGGACACGCTGGTGGTGCTGCACGGGTCAGGGG
CTCGGCTGGATGTGCGCGATGCCTGGGGTCGCCTGCCGCTCGACTTGGCCCAAGAGCGGGGACATCAAGA
CATCGTGCGATATTTGCGTTCCGCTGGGTGCTCTTTGTGTTCCGCTGGGTGGTCTTTGTGTACCGCTGGG
AACGTCGCCCAGACCGACGGGCATAGCTTCAGCTCAAGCACGCCCAGGGCCCTGGAACTTCGCGGCCAAT
CCCAAGAGCAGAGCTAA

Translation (168 aa):
MESAADRLARAAAQGRVHDVRALLEAGVSPNAPNSFGRTPIQVMMMGNVHVAALLLNYGADSNCEDPTTF
SRPVHDAAREGFLDTLVVLHGSGARLDVRDAWGRLPLDLAQERGHQDIVRYLRSAGCSLCSAGWSLCTAG
NVAQTDGHSFSSSTPRALELRGQSQEQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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