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Report for CCDS38792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38792.1 Public Mus musculus 4 Snapc3 23 108 98 CCDS HistoryNCBI Gene:77634Re-query CCDS DB by CCDS ID:38792.1Re-query CCDS DB by GeneID:77634See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030206.9 ENSMUSP00000030206.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030206.9Link to Ensembl Protein Viewer:ENSMUSP00000030206.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030206Re-query CCDS DB by Protein ID:ENSMUSP00000030206
Original member Current member EBI ENSMUST00000143533.7 ENSMUSP00000123793.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143533.7Link to Ensembl Protein Viewer:ENSMUSP00000123793.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143533Re-query CCDS DB by Protein ID:ENSMUSP00000123793
Original member Current member EBI ENSMUST00000123262.7 ENSMUSP00000124038.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123262.7Link to Ensembl Protein Viewer:ENSMUSP00000124038.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123262Re-query CCDS DB by Protein ID:ENSMUSP00000124038
Original member Current member EBI ENSMUST00000124856.7 ENSMUSP00000124181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124856.7Link to Ensembl Protein Viewer:ENSMUSP00000124181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124856Re-query CCDS DB by Protein ID:ENSMUSP00000124181
Original member Current member NCBI NM_029949.4 NP_084225.1 Accepted alive Link to Nucleotide Sequence:NM_029949.4Link to Protein Sequence:NP_084225.1Re-query CCDS DB by Nucleotide ID:NM_029949Re-query CCDS DB by Protein ID:NP_084225Link to BLAST:NP_084225.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084225.1 407 Q9D2C9 407 100% 0 0

Chromosomal Locations for CCDS 38792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83417753 83418054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83418706 83418783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83427782 83427866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83435191 83435295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83436324 83436473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83441887 83441969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83450071 83450235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83451205 83451312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83453041 83453188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGCGGAGGACCTGCAGGGCGGCGGTGCGGGTGGCCCACAGCACCCAGTCCCCAGTGCGAGCCACAGCA
GCTTTCCGGAATACGAGCTTCCCGAGTTGCACACGCGCGTGTTCCATGTGGGCTCCTTTGGGGAGCTATG
GCGTGGCCGGCTAGGGGCCCAGGATTTGTCGCTGAGCGAACCGCAGGCAGCCGAGCAGCCGACCGACGGA
GGGGCATCCAACGACGGCTTTGAGGATGCTGCAGTAGCCAGCGATCTGGGCTGCAGTCTGGAGGCAGCAG
CAGAGCTGAGGGTCGTGTGCGGCCTTGATAAACTGAGATGCCTCGGGGAAGATGAAGACCCGGAAGTCAT
CCCAGAGAACACTGACCTAGTGACTTTATGTGTGAGGAAGGGGCTTTTGGACTATCGGGAAGAAAACATC
ACAATAGATCGCGCCTGTAGACAAGAAATATTTGCTTATGAAATGGAATCTCATGCACTAGGGAAGAAAC
CTGAAAACCCAGCAGACATGATTGAAGAAGGAGAGTGTATCCTATCTGTGAACATCTTATATCCTGTTAT
ATTTAATAAGCACAAAGAACACAAACCATACCAGACCATGTTGGTACTGGGCAGTCAGAAGCTCACAGAA
CTGAGAGATTCAATTTGCTGTGTCAGTGACCTCCAGATCGGTGGAGAATTCAGCAACGCGCCAGACCAAG
CCCCTGAGCACATCAGCAAAGACCTCTACAAGTCGGCTTTTTTCTATTTTGAAGGAACATTTTACAATGA
CAGAAGATACCCAGAATGCAGAGACTTGAGCAGAACTATTATAGAGTGGTCAGAGTCCCATGATCGAGGA
TATGGAAAATTTCAGACTGCTAGAATGGAAGATTTCACATTTAATGACTTGCATATTAAACTTGGCTTTC
CTTACTTATACTGTCACCAGGGAGACTGTGAGCATGTTGTTGTCATCACAGACATAAGGCTTGTGCACCA
TGACGACTGCTTGGATAGAACACTGTATCCCCTTCTTACCAAGAAGCACTGGCTGTGGACCAGAAAATGT
TTTGTCTGTAAGATGTATACAGCTAGATGGGTGACGAACAATGACACCTTTGCACCAGAGGACCCATGTT
TCTTTTGTGATGTTTGCTTCAGAATGCTCCACTATGATTCCGAAGGCAACAAACTAGGGGAATTCCTTGC
TTATCCTTATGTTGACCCAGGAACCTTTAATTAG

Translation (407 aa):
MAEDLQGGGAGGPQHPVPSASHSSFPEYELPELHTRVFHVGSFGELWRGRLGAQDLSLSEPQAAEQPTDG
GASNDGFEDAAVASDLGCSLEAAAELRVVCGLDKLRCLGEDEDPEVIPENTDLVTLCVRKGLLDYREENI
TIDRACRQEIFAYEMESHALGKKPENPADMIEEGECILSVNILYPVIFNKHKEHKPYQTMLVLGSQKLTE
LRDSICCVSDLQIGGEFSNAPDQAPEHISKDLYKSAFFYFEGTFYNDRRYPECRDLSRTIIEWSESHDRG
YGKFQTARMEDFTFNDLHIKLGFPYLYCHQGDCEHVVVITDIRLVHHDDCLDRTLYPLLTKKHWLWTRKC
FVCKMYTARWVTNNDTFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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