NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38744.1 Public Mus musculus 4 Or13e8 23 108 98 CCDS HistoryNCBI Gene:56014Re-query CCDS DB by CCDS ID:38744.1Re-query CCDS DB by GeneID:56014See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055545.4 ENSMUSP00000060748.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055545.4Link to Ensembl Protein Viewer:ENSMUSP00000060748.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055545Re-query CCDS DB by Protein ID:ENSMUSP00000060748
Original member Current member NCBI NM_019485.2 NP_062358.2 Accepted alive Link to Nucleotide Sequence:NM_019485.2Link to Protein Sequence:NP_062358.2Re-query CCDS DB by Nucleotide ID:NM_019485Re-query CCDS DB by Protein ID:NP_062358Link to BLAST:NP_062358.2

Chromosomal Locations for CCDS 38744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43696221 43697171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCTGGGACAAACCACACAGAGGTGATAGAGTATGTCCTGCTGGGACTTCAGGACCACCACGGCCTCG
AGATCGCTCTGTTTGTGCTCTGTCTGGGTATCTACTGTATGACTCTGCTAGGGAACTCCTTCCTTGTGGG
GCTGATTGTGTTGGACACCCACCTGCACAGCCCCATGTACTTCTTCATCAGCAACCTCTCTCTCATAGAC
ATCTGCGGTACCTCTTCCTTCACACCTATGATGCTTCTCAACTTCCTGGATGTCCAAAGGACCATCTCCT
TCCCCAGCTGTGCCCTGCAGATGTACCTGACCCTGGCCCTAGGTACAACGGAGTGCCTGCTTCTGGCTGT
GATGGCATACGACCGGTACGTGGCCATCTGTCAGCCCCTCCGCTACCCGGAGCTCGTGAATGGGCCGCTA
TGCATCCAGATGGCAGGAATAAGCTGGGGGACTGGCTTTGCCAACTCGCTCCTGCATTCCATCCTGGTCT
GGCATCTCCCCTTCTGTGGTCATTACATCATCAACCATTTCTTCTGTGAGATCTTGGCAGTGCTGAAACT
GGCCTGTGGGGACATTTCCCTCAACGCGCTGATATTAACGGTGGCCACAGCTGTCCTGACAATGACCCCG
CTCCTGCTCATATGCCTCTCTTACATTTTCATCCTGGCTGCTATCCTTAGGGTGCCCTCTGCTGCAGGCC
GGAGCAAGGCCTTCTCCACCTGCTCTGCCCACCTCACGGTGGTGGTGATTTTCTATGGAACCATCACCTT
CATGTACCTCAAGCCCAAAGACCAAGACCCCAGCGTGGGTAAGATTATCACGTTGCTCTATGCGATCGTG
GCGCCCTCACTGAATGCCTTCATCTACAGTCTGAGGAACTCAGAGGTGAAAGCTGCTGTCACAGCCTTGT
TATGGGGAGGTCTACTCACCAGGAAAATGTCCCACTTTTAA

Translation (316 aa):
MAGTNHTEVIEYVLLGLQDHHGLEIALFVLCLGIYCMTLLGNSFLVGLIVLDTHLHSPMYFFISNLSLID
ICGTSSFTPMMLLNFLDVQRTISFPSCALQMYLTLALGTTECLLLAVMAYDRYVAICQPLRYPELVNGPL
CIQMAGISWGTGFANSLLHSILVWHLPFCGHYIINHFFCEILAVLKLACGDISLNALILTVATAVLTMTP
LLLICLSYIFILAAILRVPSAAGRSKAFSTCSAHLTVVVIFYGTITFMYLKPKDQDPSVGKIITLLYAIV
APSLNAFIYSLRNSEVKAAVTALLWGGLLTRKMSHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH