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Report for CCDS38660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38660.1 Public Mus musculus 3 Clca4b 23 108 98 CCDS HistoryNCBI Gene:99709Re-query CCDS DB by CCDS ID:38660.1Re-query CCDS DB by GeneID:99709See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098549.3 ENSMUSP00000096149.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098549.3Link to Ensembl Protein Viewer:ENSMUSP00000096149.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098549Re-query CCDS DB by Protein ID:ENSMUSP00000096149
Original member Current member NCBI NM_001033199.3 NP_001028371.1 Accepted alive Link to Nucleotide Sequence:NM_001033199.3Link to Protein Sequence:NP_001028371.1Re-query CCDS DB by Nucleotide ID:NM_001033199Re-query CCDS DB by Protein ID:NP_001028371Link to BLAST:NP_001028371.1

Chromosomal Locations for CCDS 38660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144911110 144911525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144911979 144912212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144913249 144913419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144915355 144915622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144916614 144916829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144919256 144919362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144921843 144922020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144922757 144922984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144925138 144925356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144926002 144926179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144927125 144927233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144928199 144928346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144928525 144928665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144932335 144932499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2778 nt):
ATGATGGCTTTCTCCAGAGGGCCTGTTTTCCTCCTCTTCCTCTTGTACCTGCTTTGGGGGTCAGACACTT
CC
TTGATAAAGCTGAATGGGAATGGTTATGAAGACATCATTATTGCCATTGATCCTGCTGTGCCAGAAGA
T
ACAACAATAATTGAACACATAAAGGGAATGGTGACTAAAGCATCTACATACCTTTTTGAAGCTACAGAA
AAA
AGATTTTTCTTCAAAAATGTGTCTATATTAATTCCTGAGAGTTGGAAAAACAGTTCCCAGTACAGAA
GG
CCAAAACAGGAGAGTTACAAGCATGCTGACATTAAAGTGGCACCTCCCGCCTTCGAGGGCAGAGATGA
G
CCCTACACCAGGCAGTTCACACAGTGTGAAGAGAAAGCAGAATACATTCACTTCACCCCTGACTTTGTA
CTG
GGGAGAAAACAAGTTGAATATGGAGATTCAGGAAAACTGTTGGTCCATGAATGGGCCCACCTTCGCT
GG
GGAGTATTTGATGAGTACAACGAAGACCAGCCATTCTACAGTGCTTCATCAAAGAAAATCGAAGCAAC
A
AGGTGCTCCACAGGTATCACGGGTATGAATAGAGTCCATACATGCCAAGGGGGCAGCTGTATAACCAGA
AGG
TGCAGAACTAATTCCACCACAAAGTTATATGAAAAGGATTGTCAGTTCTTCCCAGATAAAGTTCAAT
CA
GAAAAGGCATCCATAATGTTCATGCAAAGTATCGATTCTGTGACTGAGTTCTGTAAAAAAGAAAACCA
T
AATCGAGAGGCTCCAACTCTACATAATGAAAAGTGCCAATGGAGAAGCACTTGGGAAGTAATCAGCAGT
TCT
GAGGATTTTAACAGCAGCACGCCCATGGAGACACCACCGGCTCCACCCTTCTTCTCCCTGCTGAGGA
TC
AGTGAGAGAATTGTGTGCCTAGTTCTTGATGTGTCAGGGAGTATGAGTTCTTCTGACCGTCTGAATAG
A
ATGAACCAAGCAGCAAAATACTTTCTAAGCCAGATAATTGAAAATAGGTCCTGGGTAGGGATGGTGCAC
TTT
AGTAGCCAGGCCACTATTGTGCATGAGCTGATCCAAATGAACAGTGACATCGAGAGAAACAAGCTCT
TG
CAAACTTTACCTACAAGTGCCATTGGAGGGACGTCCATCTGCTCTGGAATCAAGACTGCATTTCAGGT
A
TTTAAAAATGGAGAATACCAAACAGATGGGACTGAGATCTTGCTGTTGAGTGATGGGGAGGACAGCACA
GCC
AAAGACTGTATTGACGAGGTGAAAGACAGCGGGTCCATAGTTCATTTCATTGCCTTGGGACCATCGG
CT
GACTTAGCTGTAACAAACATGAGCATTTTAACAGGTGGAAACCATAAGCTTGCTACAGATGAAGCCCA
G
AACAATGGACTCATTGATGCTTTCGGGGCCCTGGCTTCAGAAAATACTGATATCACCCAGAAGTCACTT
CAG
CTTGAAAGTAAGGGTGCCATACTGAATAATAGCCTCTGGCTGAATGACACTGTTGTAATTGACAGCA
CC
GTGGGAAGGGACACATTCTTTCTTGTCACCTGGAGCAAACAAGCCCCTGCCATTTATCTCAGGGATCC
C
AAAGGAACACAAACCACCAATTTCACAATGGACTTTGTTTCCAAAATGGCCTATCTCAGTATCCCAGGA
ACA
GCTGAGGTGGGCGTTTGGACTTACAACCTGGAAGCCAAAGAAAACTCAGAGATACTAACAATTACAG
TA
ACCTCTCGGGCAGCAAATTCTTCTGTGCCACCAATCTCTGTAAATGCTAAGGTAAACACGGACACTAA
C
ACTTTCCCCAGCCCAATGATTGTGTATGCTGAAGTTCTACAAGGGTACACTCCTATCATTGGAGCCCGA
GTG
ACAGCCACCATAGAATCTAACAGTGGGAAGACAGAAGAGCTAGTCCTGCTGGACAACGGTGCAGGGG
CT
GATGCTTTCAAGGATGATGGGGTCTACTCCAGGTTCTTCACAGCTTATTCAGTGAATGGCAGGTATAG
C
TTAAAAGTCCGTGCAGATGGAGGAACAAACTCTGCCAGGAGGAGTTTACGCCACCCATCAAGCAGAGCT
GCA
TACATACCAGGCTGGGTAGTAGATGGAGAAATTCAAGGGAACCCACCCAGACCCGAAATGACTGAGG
CT
ACTCAGCCAGTCCTAGAGAATTTCAGCAGGACAGCATCTGGAGGTGCCTTTGTGATGTCCAATGTTCC
A
ATTGGTCCATTGCCTGATCAGTACCCACCAAATCGAATCACAGACCTCCAGGCCACACTCGATGGGGAA
GAG
ATCAGTCTAACATGGACGGCCCCAGGAGATGATTATGATGTTGGAAGAGTTCAACAGTATATCATAA
GA
ACAAGCGAAAATATCATTGATCTCAGAGACAATTTTAATAATTCTCTTCGGGTTGATACTACTAAACT
T
ACACCAAAAGAAGCCAACTCCAAAGAAACCTTTGCCTTTAAACCAGAAAATATCTCAGAAGAAAATGCA
ACC
TACATATTCATTGCCATTGAAAGTGTCGACAAAAACAATTTGAGTTCGGGACCATCCAACATCGCAC
AA
GTGGCAATGTTCACCCCTCAGGCAGAGCCTGTCCCTGATGAAAGTCCACGTTCATCAGGAGTTAGTAT
T
TCTACTATTGTGCTGTCTGTGGTGGGCTCTGTTGTACTAGTTTGTATTATTGTAAGTACCACTATTTGT
ATC
TTAAAGAACAAAAGGTCCTCATCAGGAGCTGCAACAACATTTTGA


Translation (925 aa):
MMAFSRGPVFLLFLLYLLWGSDTSLIKLNGNGYEDIIIAIDPAVPEDTTIIEHIKGMVTKASTYLFEATE
K
RFFFKNVSILIPESWKNSSQYRRPKQESYKH
ADIKVAPPAFEGRDEPYTRQFTQCEEKAEYIHFTPDFV
L
GRKQVEYGDS
GKLLVHEWAHLRWGVFDEYNEDQPFYSASSKKIEATRCSTGITGMNRVHTCQGGSCITR
R
CRTNSTTKLYEKDCQFFPDKVQSEKASIMFMQSIDS
VTEFCKKENHNREAPTLHNEKCQWRSTWEVISS
S
EDFNSSTPMETPPAPPFFSLLRISERIVCLVLDVSGSMS
SSDRLNRMNQAAKYFLSQIIENRSWVGMVH
F
SSQATIVHELIQMNSDIERNKLLQTLPTSAIGGTSICSGIKTAFQ
VFKNGEYQTDGTEILLLSDGEDST
A
KDCIDEVKDSGSIVHFIALGPSADLAVTNMSILT
GGNHKLATDEAQNNGLIDAFGALASENTDITQKSL
Q
LESKGAILNNSLWLNDTVVIDSTVGRDTFFLVTWSKQAPAIYLRDPKGTQTTNFTMDFVSKMAYLSIPG
T
AE
VGVWTYNLEAKENSEILTITVTSRAANSSVPPISVNAKVNTDTNTFPSPMIVYAEVLQGYTPIIGAR
V
TATIESNSGKTEELVLLDNGA
GADAFKDDGVYSRFFTAYSVNGRYSLKVRADGGTNSARRSLRHPSSRA
A
YIPGWVVD
GEIQGNPPRPEMTEATQPVLENFSRTASGGAFVMSNVPIGPLPDQYPPNRITDLQATLDGE
E
ISLTWTAPGDDYDVGR
VQQYIIRTSENIIDLRDNFNNSLRVDTTKLTPKEANSKETFAFKPENISEENA
T
YIFIAIESVDKNNLSSGPSNIAQVAMFTPQAEPVPDESPRSSGVSISTIVLSVVGSVVLVCIIVSTTIC
I
LKNKRSSSGAATTF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser