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Report for CCDS38524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38524.1 Public Mus musculus 3 Crnn 23 108 98 CCDS HistoryNCBI Gene:381457Re-query CCDS DB by CCDS ID:38524.1Re-query CCDS DB by GeneID:381457See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107300.6 ENSMUSP00000102921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107300.6Link to Ensembl Protein Viewer:ENSMUSP00000102921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107300Re-query CCDS DB by Protein ID:ENSMUSP00000102921
Original member Current member EBI ENSMUST00000195515.1 ENSMUSP00000141980.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195515.1Link to Ensembl Protein Viewer:ENSMUSP00000141980.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195515Re-query CCDS DB by Protein ID:ENSMUSP00000141980
Original member Current member NCBI NM_001081200.2 NP_001074669.1 Accepted alive Link to Nucleotide Sequence:NM_001081200.2Link to Protein Sequence:NP_001074669.1Re-query CCDS DB by Nucleotide ID:NM_001081200Re-query CCDS DB by Protein ID:NP_001074669Link to BLAST:NP_001074669.1

Chromosomal Locations for CCDS 38524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 93146812 93146949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 93148047 93149471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGCCTCAGTTGCTGCAAAACATCCACGGGATCATCGAAGCCTTCGGGTGCTATGCCAGGTCAGAGGGTG
GCTGCAAAGTACTCACGAGGCAGGAGTTGAAGAGGCTCCTGGAACATGAGTTTGCTGACGTCATAGTGAA
GCCCCATGATCCTGCAACTGTGGATGAAGTCCTGCGCCTGTTGGATGAAGATAACACAGGGACTGTAGAG
TTCAAGGAATTCCTAGTCTTGGTGTTTAAAGTTGCACGGGCTTGCTTTAAGACACTGAATGAGAGTCCTA
AGGGTGCTTGCATATCTGACAAGTCTGAAGGCTGCTATTCTGGATCTTCAAAAGAGCTGGAGCAAAGACA
GAGAGGTGGTGCTGAAGTGGCAAAAGACGGAGCAGCACAGCACTGTGAAGACAGCAGCTGTGGACAGAGA
GATCAGGCTTCTAGAGGACAGGACAGGGTTGGGACACATACCCAGAATCAGGACAGCTACCCTACACAGG
TCAGCAGTCATGACAGGCAGACTGAGTCTCAGACACAGGAAATGATAAGCCAACAAACACAAGTGACAGG
ACAGGTGGAGCAGACCCCAAGAACAGAAGACAAGAGTTGGACCAGACAGAAGAGGTCAGAGAGGCAACCA
CAGAGTAGCCAACAGACAGATGAGATCACAACTGGATCTACAGCTCAGACCCAAGCAGGTAACTTCTACA
CACAGGGGTCTACCTGTGACTATAACAGAGGAACTAACAGCCATCACCAAGACAGAAGCCATGCAGACAG
AGCTTCTACACAACACTACCAGACACAGGCAGGGTCTCATACTCAGATACACACACAGATGGTAGAACAG
GCCTGGGGGCAGCAAACAGGAAGTGATAGCATCCAGACACAGGGGTCTATCTATGACCAGAGCACTGAGA
CTGTGATTCATGGCCAAGACAGGAACCAGGCAAGCCAGAGTGTTAAAGAACACCACCAGGCACAGGGAGA
GTCATATATTCAGACACATACTCAGACAATGGAACAAGGCAGGAGCCAGCAGGCAGAAAATAGTAGCACC
CAGACTCATGGGTCCATGTATGGCCAAAACAGAGAGACTGAGATCCATGGGCTAGAAAGCAGTCAGGCAG
AACAGGTGGGGACAAGACACTACCAGACACAGGCAGGATCATATACCCAGACTTTGGAACATGATGGGAG
CCAGTCTGCACATAAATTTGTGGCTCAAGAAAAGGAACGTACACAGACAAAGCCATGCATGGGGCAAAGC
TGGACACCAGTAAGCAACTATGAGACAGAAGAGTCAGTGATAGGAGGACAGGTCCAGACTGAGACAGACA
CTATTATAGAGAATCACCCAAGCCCGACAGCCAGGCAGGTAGAGAGAGTACCCACAGTGGTTAGAGAGGA
GTGGGTCAATGACCACACAAGGGAAATAGTAATCCGAAGCCAGGATCCAGGTAGCCTGCACTCTGGTACT
CCTTCAGCTCAGGGCCAGGATATACCACAGATGGAGAAGAAAGGAATCACAGCCAAGGGACTATATACCT
ACTTGAAGACAGAGCAGCCATGA

Translation (520 aa):
MPQLLQNIHGIIEAFGCYARSEGGCKVLTRQELKRLLEHEFADVIVKPHDPATVDEVLRLLDEDNTGTVE
FKEFLVLVFKVARACFKTLNESPKGACISDKSEGCYSGSSKELEQRQRGGAEVAKDGAAQHCEDSSCGQR
DQASRGQDRVGTHTQNQDSYPTQVSSHDRQTESQTQEMISQQTQVTGQVEQTPRTEDKSWTRQKRSERQP
QSSQQTDEITTGSTAQTQAGNFYTQGSTCDYNRGTNSHHQDRSHADRASTQHYQTQAGSHTQIHTQMVEQ
AWGQQTGSDSIQTQGSIYDQSTETVIHGQDRNQASQSVKEHHQAQGESYIQTHTQTMEQGRSQQAENSST
QTHGSMYGQNRETEIHGLESSQAEQVGTRHYQTQAGSYTQTLEHDGSQSAHKFVAQEKERTQTKPCMGQS
WTPVSNYETEESVIGGQVQTETDTIIENHPSPTARQVERVPTVVREEWVNDHTREIVIRSQDPGSLHSGT
PSAQGQDIPQMEKKGITAKGLYTYLKTEQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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