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Report for CCDS38514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38514.1 Public Mus musculus 3 Lce1c 23 108 98 CCDS HistoryNCBI Gene:73719Re-query CCDS DB by CCDS ID:38514.1Re-query CCDS DB by GeneID:73719See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047055.3 ENSMUSP00000045573.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047055.3Link to Ensembl Protein Viewer:ENSMUSP00000045573.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047055Re-query CCDS DB by Protein ID:ENSMUSP00000045573
Original member Current member NCBI NM_028622.2 NP_082898.1 Accepted alive Link to Nucleotide Sequence:NM_028622.2Link to Protein Sequence:NP_082898.1Re-query CCDS DB by Nucleotide ID:NM_028622Re-query CCDS DB by Protein ID:NP_082898Link to BLAST:NP_082898.1

Chromosomal Locations for CCDS 38514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92680268 92680711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTCCTCCCAAGTGCACCCCCAAGTGCCCTCCCAAGT
GCCAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTG
CTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGC
AGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACA
GCTCTGGATGCTGTAGCAGTGGTGGCAGCAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGTGGCTGCTG
TGGCAGCAGTGGTGGTAGCAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGTGGCTGCTGTGGCAGTAGC
CAGCAGTCTGGAGACTGCTGCTGA

Translation (147 aa):
MSCQQSQQQCQPPPKCTPKCPPKCQTPKCPPKCPPKCPPKCPPVSSCCSLGSGGCCGSSSGGCCSSGGCC
SSGGGGCCLSHHRPRRSLHRHRHSSGCCSSGGSSGCCGSSGGSSGCCGSSGGSSGCCGSSGGSSGCCGSS
QQSGDCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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