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Report for CCDS38484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38484.1 Public Mus musculus 3 Syt11 23 108 98 CCDS HistoryNCBI Gene:229521Re-query CCDS DB by CCDS ID:38484.1Re-query CCDS DB by GeneID:229521See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090945.4 ENSMUSP00000088464.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090945.4Link to Ensembl Protein Viewer:ENSMUSP00000088464.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090945Re-query CCDS DB by Protein ID:ENSMUSP00000088464
Original member Current member EBI ENSMUST00000107505.7 ENSMUSP00000103129.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107505.7Link to Ensembl Protein Viewer:ENSMUSP00000103129.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107505Re-query CCDS DB by Protein ID:ENSMUSP00000103129
Original member Current member NCBI NM_018804.3 NP_061274.2 Accepted alive Link to Nucleotide Sequence:NM_018804.3Link to Protein Sequence:NP_061274.2Re-query CCDS DB by Nucleotide ID:NM_018804Re-query CCDS DB by Protein ID:NP_061274Link to BLAST:NP_061274.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061274.2 430 Q9R0N3 430 100% 0 0

Chromosomal Locations for CCDS 38484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88747700 88748010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88748779 88748902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88761726 88762549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88772291 88772324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGCTGAGATCACAAATATACGCCCCAGCTTTGATGTGTCACCGGTAGCGGCTGGCCTCATCGGGGCCT
CCGTGCTGGTGGTGTGTGTTTCAGTGACTGTCTTTGTGTGGACGTGCTGCCACCAGCAGGCAGAGAAGAA
GCACAAGACCCCGCCATACAAGTTCATTCATATGCTGAAAGGCATTAGCATCTACCCAGAGACCCTCAGC
AACAAGAAGAAAATCATCAAAGTTCGGAGAGACAAAGATGGCCCTCGGAGGGAAAGTGGACGAGGGAACC
TGTTAATAAACGCGGAGTCTGGCCTGCTGAGCCACGACAAGGATCCCAGAGGGCCTAGCCCTGCATCTTG
TATGGACCAGTTACCCATCAAAAGAGACTATGGGGAAGAACTGAGGAGCCCCATGACAAGCCTGACCCCT
GGTGAGAGCAAAGCCACCTCCCCATCCTCGCCAGAGGAAGACGTGATGTTAGGCTCTCTTACCTTCTCCG
TGGACTACAACTTTCCCAAGAAAGCTCTGGTGGTGACAATCCAAGAGGCTCACGGGCTGCCAGTGATGGA
TGACCAGACCCAGGGCTCCGATCCCTACATCAAAATGACCATTCTCCCGGACAAGCGGCATCGAGTGAAG
ACCCGAGTGCTTCGCAAGACGCTGGACCCGGTGTTCGATGAGACCTTCACCTTCTACGGCATCCCGTACA
GCCAGCTGCAGGACCTGGTGCTGCATTTCCTGGTGCTCAGCTTTGATCGATTCTCTCGGGATGACGTCAT
CGGAGAGGTCATGGTGCCATTGGCTGGAGTGGACCCCAGCACAGGCAAGGTTCAGCTGACCAGGGACATC
ATCAAGAGGAACATTCAGAAGTGCATTAGCAGAGGGGAACTCCAGGTATCTCTGTCATACCAGCCCGTCG
CACAGAGAATGACAGTGGTGGTCCTCAAAGCCAGACACTTGCCGAAGATGGATATCACCGGTCTCTCAGG
TAATCCTTATGTCAAGGTGAACGTCTACTACGGCAGAAAACGCATTGCCAAGAAGAAAACCCATGTAAAG
AAGTGCACTTTGAACCCCGTCTTCAATGAGTCGTTCATCTATGACATCCCCACCGACCTTCTGCCTGATA
TCAGCATCGAGTTCCTTGTCATTGACTTCGATCGCACTACTAAGAATGAGGTGGTAGGGAGGCTGATCTT
GGGGGCACACAGTGTCACAACCAGTGGTGCGGAACACTGGAGAGAGGTCTGCGAGAGTCCCCGCAAGCCC
ATAGCCAAGTGGCACAGTCTGAGCGAGTACTAA

Translation (430 aa):
MAEITNIRPSFDVSPVAAGLIGASVLVVCVSVTVFVWTCCHQQAEKKHKTPPYKFIHMLKGISIYPETLS
NKKKIIKVRRDKDGPRRESGRGNLLINAESGLLSHDKDPRGPSPASCMDQLPIKRDYGEELRSPMTSLTP
GESKATSPSSPEEDVMLGSLTFSVDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRHRVK
TRVLRKTLDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDVIGEVMVPLAGVDPSTGKVQLTRDI
IKRNIQKCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKVNVYYGRKRIAKKKTHVK
KCTLNPVFNESFIYDIPTDLLPDISIEFLVIDFDRTTKNEVVGRLILGAHSVTTSGAEHWREVCESPRKP
IAKWHSLSEY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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