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Report for CCDS38464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38464.1 Public Mus musculus 3 Mnd1 23 108 98 CCDS HistoryNCBI Gene:76915Re-query CCDS DB by CCDS ID:38464.1Re-query CCDS DB by GeneID:76915See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047368.7 ENSMUSP00000048262.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047368.7Link to Ensembl Protein Viewer:ENSMUSP00000048262.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047368Re-query CCDS DB by Protein ID:ENSMUSP00000048262
Original member NCBI NM_029797.3 NP_084073.2 Updated not alive Link to Nucleotide Sequence:NM_029797.3Link to Protein Sequence:NP_084073.2Re-query CCDS DB by Nucleotide ID:NM_029797Re-query CCDS DB by Protein ID:NP_084073
Current member NCBI NM_029797.4 NP_084073.2 Accepted alive Link to Nucleotide Sequence:NM_029797.4Link to Protein Sequence:NP_084073.2Re-query CCDS DB by Nucleotide ID:NM_029797Re-query CCDS DB by Protein ID:NP_084073Link to BLAST:NP_084073.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084073.2 205 Q8K396 205 100% 0 0

Chromosomal Locations for CCDS 38464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 84088068 84088174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84093555 84093599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84104935 84105049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84116427 84116501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84134018 84134166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84138169 84138226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84141699 84141764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84155662 84155664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTCAAAGAAAAGAGGACTGAGTGGGGAGGAAAAGAGAACCCGGATGATGGAGATATTTTTTGAGACAA
AAGATGTATTCCAGCTGAAAGACCTGGAGAAGCTTGCTCCCAAAGAGAAAGGCATAACCGCCATGTCAGT
GAAGGAAGTCCTTCAGAGCCTAGTGGATGACGGTATGGTTGACTGCGAGAGGATCGGGACGTCCAATTAC
TATTGGGCTTTTCCGAGCAAGGCTCTTCATGCCAGGAAGCGCAAGTTGGAGGCTCTGAACTCTCAGCTGT
CAGAGGGAAGCCAGAAGCATGCAGACTTACAGAAGAGCATTGAGAAAGCAAGAGTTGGCCGGCAAGAGAC
GGAAGAACGAGCCATGCTTGCAAAAGAACTTTCTTCATTTCGAGACCAAAGGCAACAACTTAAGGCAGAA
GTGGAAAAATATCGAGAATGTGACCCACAGGTTGTGGAAGAGATACGTGAAGCAAATAAAGTAGCTAAAG
AAGCCGCCAATCGATGGACTGATAACATATTTGCAATAAAATCCTGGGCCAAAAGAAAATTTGGGTTTGA
AGAAAGTAAAATTGATAAAAACTTTGGAATTCCAGAAGACTTTGACTACATAGACTAA

Translation (205 aa):
MSKKRGLSGEEKRTRMMEIFFETKDVFQLKDLEKLAPKEKGITAMSVKEVLQSLVDDGMVDCERIGTSNY
YWAFPSKALHARKRKLEALNSQLSEGSQKHADLQKSIEKARVGRQETEERAMLAKELSSFRDQRQQLKAE
VEKYRECDPQVVEEIREANKVAKEAANRWTDNIFAIKSWAKRKFGFEESKIDKNFGIPEDFDYID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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