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Report for CCDS38453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38453.1 Public Mus musculus 3 Sptssb 23 108 98 CCDS HistoryNCBI Gene:66183Re-query CCDS DB by CCDS ID:38453.1Re-query CCDS DB by GeneID:66183See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051239.12 ENSMUSP00000062794.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051239.12Link to Ensembl Protein Viewer:ENSMUSP00000062794.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051239Re-query CCDS DB by Protein ID:ENSMUSP00000062794
Original member Current member EBI ENSMUST00000171529.3 ENSMUSP00000131241.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171529.3Link to Ensembl Protein Viewer:ENSMUSP00000131241.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171529Re-query CCDS DB by Protein ID:ENSMUSP00000131241
Original member Current member NCBI NM_001164210.2 NP_001157682.1 Accepted alive Link to Nucleotide Sequence:NM_001164210.2Link to Protein Sequence:NP_001157682.1Re-query CCDS DB by Nucleotide ID:NM_001164210Re-query CCDS DB by Protein ID:NP_001157682Link to BLAST:NP_001157682.1
Original member Current member NCBI NM_133675.3 NP_598436.1 Accepted alive Link to Nucleotide Sequence:NM_133675.3Link to Protein Sequence:NP_598436.1Re-query CCDS DB by Nucleotide ID:NM_133675Re-query CCDS DB by Protein ID:NP_598436Link to BLAST:NP_598436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157682.1 76 Q925E8 76 100% 0 0
NP_598436.1 76 Q925E8 76 100% 0 0

Chromosomal Locations for CCDS 38453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 69820872 69821102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (231 nt):
ATGGATTTCAAGCGCGTGAAGGAGTATTTTGCCTGGCTCTATTATCAATACCAGATCATCACCTGCTGTG
CTGTCATGGAGCCTTGGGAACAATCGATGCTCAACACCATCATACTGACCATTGTGGCTATGGTGGTATA
CACTGCCTATGTCTTCATCCCCATCCACATCCGCCTGGCTTGGGAATTTTTCTCCAAAATATGTGGCTAT
GACAGTTCCATTTCTAACTGA

Translation (76 aa):
MDFKRVKEYFAWLYYQYQIITCCAVMEPWEQSMLNTIILTIVAMVVYTAYVFIPIHIRLAWEFFSKICGY
DSSISN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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