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Report for CCDS38399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38399.1 Public Mus musculus 3 Trim55 23 108 98 CCDS HistoryNCBI Gene:381485Re-query CCDS DB by CCDS ID:38399.1Re-query CCDS DB by GeneID:381485See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38399.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029139.8 ENSMUSP00000029139.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029139.8Link to Ensembl Protein Viewer:ENSMUSP00000029139.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029139Re-query CCDS DB by Protein ID:ENSMUSP00000029139
Original member Current member NCBI NM_001081281.2 NP_001074750.1 Accepted alive Link to Nucleotide Sequence:NM_001081281.2Link to Protein Sequence:NP_001074750.1Re-query CCDS DB by Nucleotide ID:NM_001081281Re-query CCDS DB by Protein ID:NP_001074750Link to BLAST:NP_001074750.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074750.1 545 G3X8Y1 545 100% 0 0

Chromosomal Locations for CCDS 38399.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 19644609 19644776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19645274 19645446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19659128 19659293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19661785 19661880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19670924 19671157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19671407 19671429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19671530 19671654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19672756 19672997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19674254 19674541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19691477 19691599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGAGCACTTCTCTGAATTACAAGTCTTTCTCCAAAGAGCAGCAGACCATGGATAACTTGGAAAAGCAAC
TGATCTGTCCCATCTGCCTAGAGATGTTCACGAAGCCTGTGGTCATTCTCCCTTGCCAGCACAACCTGTG
CAGGAAATGTGCCAGTGACATCTTCCAGGCCTCTAACCCGTACTTACCCACAAGAGGAGGCACCACCGTG
GCATCAGGGGGCCGCTTCCGCTGTCCCTCCTGCAGACATGAGGTGGTGTTAGACAGACATGGGGTCTATG
GACTGCAGAGGAACCTGCTCGTGGAAAACATTATTGATATCTACAAGCAGGAATCCACCAGGCCAGAAAA
AAAATTGGACCAGCCCATGTGTGAAGAGCATGAAGAGGAACGCATCAACATCTATTGTCTGAACTGTGAA
GTGCCCACCTGTTCCTTGTGCAAGGTTTTTGGCGCCCATAAGGACTGCCAGGTGGCTCCCCTGACTCATG
TGTTCCAGAGGCAGAAGTCAGAGCTCAGTGATGGTATTGCTGTACTTGTGGGAAGCAACGATAGAGTCCA
GGGTGTGATCAGCCAGCTGGAGGACACCTGTAAAACTATTGAGGAGTGCTGCAGAAAGCAGAAACAGGAC
CTGTGTGAGAAATTTGATCACCTATACGGCATCCTGGAGGAGAGGAAGACTGAAATGACCCAAGCCATCA
CTCGAACACAGGAGGAGAAACTGGAACATGTCCGAACTCTTATCAGGAAGTATTCCGATCACCTGGAGAA
CGTATCCAAGTTGGTGGAGTCAGGAATCCAGTTCATGGATGAGCCCGAAATGGCAGTATTTCTGCAGAAT
GCCAAGACCCTGTTGCAAAAGATCGTGGAAGCATCAAAGGCGTTTCAGATGGAGAAACTAGAACAAGGTT
ATGAGATCATGAGCAACTTCACTGTCAATCTCAATAGAGAAGAAAAAATTATCCGTGAAATTGACTTTTC
TAGAGAAGAGGAAGAGGAAGAAGATGCAGGAGAAATAGATGAAGAAGGAGAAGGAGAGGATGCAGTAGAA
GTAGAAGAGGCAGAAAATGTTCAAATAGCATCTTCAGGGGAAGAGGAGAGTCTGGAGAAAGCTGCAGAGC
CCTCTCAGCTTCCCGCAGAGCTTCAGGTCGCCCCAGAGCCACTACCTGCTTCCTCTCCAGAACCGTTTTC
ATCCATGCCACCTGCTGCAGATGTCCTGGTGACACAGGGGGAGGTGGTGCCCATTGGCTCTCAGCAGACC
ACACAGTCTGAAACTTCAGGCCCTTCAGCAGCGGAAACTGCGGATCCCTTGTTTTACCCTAGTTGGTATA
AAGGCCAAAGCCGGAAAACCAGCTCCAACCCACCTTGCACTCATGGGAGTGAAGGTCTGGGTCAAATAGG
GCCTCTGGGCATTGAGGATTCCAGTGTGCAGTCCGCAGAAGTGGCAGAAGCCGCAACCAATGAGCAGGCA
GCAGTGAGTGGTAAGGAGTCTAGTTCAACTGCAGCTACCTCTCAGATTGGATTTGAGGCCCCTTCTCCCC
AGGGACAGTCTGCAGCCTTGGGGAGTGGGGGTGGGGCTGATCCTGAGCCAGCTCGCCACGTCTTCTCCTT
CTCCTGGTTGAATTCCCTAAATGAATAA

Translation (545 aa):
MSTSLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTV
ASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKLDQPMCEEHEEERINIYCLNCE
VPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAVLVGSNDRVQGVISQLEDTCKTIEECCRKQKQD
LCEKFDHLYGILEERKTEMTQAITRTQEEKLEHVRTLIRKYSDHLENVSKLVESGIQFMDEPEMAVFLQN
AKTLLQKIVEASKAFQMEKLEQGYEIMSNFTVNLNREEKIIREIDFSREEEEEEDAGEIDEEGEGEDAVE
VEEAENVQIASSGEEESLEKAAEPSQLPAELQVAPEPLPASSPEPFSSMPPAADVLVTQGEVVPIGSQQT
TQSETSGPSAAETADPLFYPSWYKGQSRKTSSNPPCTHGSEGLGQIGPLGIEDSSVQSAEVAEAATNEQA
AVSGKESSSTAATSQIGFEAPSPQGQSAALGSGGGADPEPARHVFSFSWLNSLNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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