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Report for CCDS38387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38387.1 Public Mus musculus 3 Tpd52 23 108 98 CCDS HistoryNCBI Gene:21985Re-query CCDS DB by CCDS ID:38387.1Re-query CCDS DB by GeneID:21985See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094381.10 ENSMUSP00000091943.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094381.10Link to Ensembl Protein Viewer:ENSMUSP00000091943.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094381Re-query CCDS DB by Protein ID:ENSMUSP00000091943
Original member NCBI NM_001025261.2 NP_001020432.1 Updated not alive Link to Nucleotide Sequence:NM_001025261.2Link to Protein Sequence:NP_001020432.1Re-query CCDS DB by Nucleotide ID:NM_001025261Re-query CCDS DB by Protein ID:NP_001020432
Current member NCBI NM_001025261.3 NP_001020432.1 Accepted alive Link to Nucleotide Sequence:NM_001025261.3Link to Protein Sequence:NP_001020432.1Re-query CCDS DB by Nucleotide ID:NM_001025261Re-query CCDS DB by Protein ID:NP_001020432Link to BLAST:NP_001020432.1

Chromosomal Locations for CCDS 38387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 8931052 8931174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8934992 8935040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8936439 8936480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8943551 8943577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8944611 8944712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8947481 8947629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8953684 8953799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8963847 8963982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGAGTGCAGAGATATGGAGTTGGCTGATGATTACCAATCCCCCTTTGATTTTGATTCTGGAGTGAACA
AGAACTACCTCTACCTCTCTCCAAGCGGGAACACCTCGCCGCCTGGTTCACCTACACAGAACGTTGGTCT
GCTGAAGACAGAGCCGGTGGCCGAGGAAGGAGAGGATGCTGTTACCATGCTCAGTGCTCCAGAGGCGCTG
ACGGAAGAGGAGCAAGAGGAGCTGAGGCGGGAGCTTACTAAGGTGGAAGAAGAAATCCAGACTCTGTCCC
AAGTATTGGCCGCAAAAGAGAAGCATCTCGCCGAGCTCAAGCGGAAGCTCGGCATCTCCTCGCTTCAGGA
GTTCAAGCAGAACATTGCCAAAGGGTGGCAAGACGTGACGGCAACCAATGCATACAAGAAGACCTCTGAA
ACTCTATCGCAAGCTGGGCAGAAGGCCTCCGCTGCATTTTCATCGGTTGGCTCAGTCATCACCAAAAAGC
TGGAAGACGTGAAATTGCAAGCTTTCTCACATTCATTTAGTATCCGCTCCATTCAGCATTCGATTAGCAT
GCCTGCTATGAGAAACTCCCCAACTTTCAAGTCATTTGAAGAAAAAGTTGAAAATTTAAAGTCTAAAGTA
GGAGGAGCCAAGCCTGCTGGCGGCGATTTTGGAGAAGTCCTGAATTCCACAGCCAACGCTACCAGTACCA
TGACCACAGAGCCTCCTCCAGAACAGATGACAGAGAGCCCCTGA

Translation (247 aa):
MECRDMELADDYQSPFDFDSGVNKNYLYLSPSGNTSPPGSPTQNVGLLKTEPVAEEGEDAVTMLSAPEAL
TEEEQEELRRELTKVEEEIQTLSQVLAAKEKHLAELKRKLGISSLQEFKQNIAKGWQDVTATNAYKKTSE
TLSQAGQKASAAFSSVGSVITKKLEDVKLQAFSHSFSIRSIQHSISMPAMRNSPTFKSFEEKVENLKSKV
GGAKPAGGDFGEVLNSTANATSTMTTEPPPEQMTESP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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