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Report for CCDS3824.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
3824.1 |
Public |
Homo sapiens |
4 |
GPM6A |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:2823](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:3824.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:2823](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 3824.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000280187.11 |
ENSP00000280187.7 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000280187.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000280187.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000280187](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000280187](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000393658.7 |
ENSP00000377268.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000393658.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000377268.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000393658](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000377268](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_005277.5 |
NP_005268.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_005277.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_005268.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_005277](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_005268](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_005268.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_201591.3 |
NP_963885.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_201591.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_963885.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_201591](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_963885](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_963885.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 3824.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (837 nt): ATGGAAGAGAATATGGAAGAGGGACAGACACAAAAAGGGTGTTTTGAATGCTGTATCAAATGCCTGGGGG GCATTCCCTATGCCTCTCTGATTGCCACCATCCTGCTCTATGCGGGTGTTGCCCTGTTCTGTGGCTGCGG TCATGAAGCGCTTTCTGGAACTGTCAACATTCTGCAAACCTACTTTGAGATGGCAAGAACTGCTGGAGAC ACACTGGATGTTTTTACCATGATTGACATCTTTAAGTATGTGATCTACGGCATCGCAGCTGCGTTCTTTG TGTATGGCATTTTGCTGATGGTGGAAGGTTTCTTCACAACTGGGGCCATCAAAGATCTCTATGGGGATTT CAAAATCACCACTTGTGGCAGATGTGTGAGCGCTTGGTTCATTATGCTGACATATCTTTTCATGTTGGCC TGGCTGGGAGTCACGGCTTTCACCTCACTGCCAGTTTACATGTACTTCAATCTGTGGACCATCTGCCGGA ACACCACATTAGTGGAGGGAGCAAATCTCTGCTTGGACCTTCGTCAGTTTGGAATTGTGACAATTGGAGA GGAAAAGAAAATTTGTACTGTCTCTGAGAATTTCTTGAGGATGTGCGAATCTACTGAGCTGAACATGACC TTCCACTTGTTTATTGTGGCACTTGCTGGAGCTGGGGCAGCAGTCATTGCTATGGTTCACTACCTTATGG TTCTGTCTGCCAACTGGGCCTATGTGAAAGACGCCTGCCGGATGCAGAAGTATGAAGACATCAAGTCGAA GGAAGAGCAAGAGCTTCATGACATCCACTCTACTCGCTCCAAAGAGCGGCTCAATGCATACACATAA
Translation (278 aa): MEENMEEGQTQKGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGD TLDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIMLTYLFMLA WLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKICTVSENFLRMCESTELNMT FHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT
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