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Report for CCDS38163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38163.1 Public Mus musculus 2 Slc43a1 23 108 98 CCDS HistoryNCBI Gene:72401Re-query CCDS DB by CCDS ID:38163.1Re-query CCDS DB by GeneID:72401See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111624.7 ENSMUSP00000107251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111624.7Link to Ensembl Protein Viewer:ENSMUSP00000107251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111624Re-query CCDS DB by Protein ID:ENSMUSP00000107251
Original member Current member EBI ENSMUST00000121114.7 ENSMUSP00000112642.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121114.7Link to Ensembl Protein Viewer:ENSMUSP00000112642.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121114Re-query CCDS DB by Protein ID:ENSMUSP00000112642
Original member Current member NCBI NM_024497.1 NP_078773.1 Accepted alive Link to Nucleotide Sequence:NM_024497.1Link to Protein Sequence:NP_078773.1Re-query CCDS DB by Nucleotide ID:NM_024497Re-query CCDS DB by Protein ID:NP_078773Link to BLAST:NP_078773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078773.1 564 Q8BSM7 564 100% 0 0

Chromosomal Locations for CCDS 38163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84840852 84841005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84849666 84849843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84849952 84850007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84850116 84850192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84852668 84852760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84854412 84854545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84855471 84855649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84856757 84856903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84857061 84857096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84857284 84857437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84859689 84859830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84860090 84860163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84861376 84861499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84862883 84863029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGCTCCCACGCTGAAGCAGGCGTACCGCAGGCGCTGGTGGATGGCTTGCACCGCTGTGGTGGAGAACC
TCTTCTTCTCCGCGGTGCTCCTGGGCTGGGCCTCCCTGCTGATCATGCTCAAGAAGGAAGGCTTCTATTC
CAGCCTGTGCCCAGCTGAGAACAGGACCAATACCACCCAAGATGAACAGCATCAGTGGACAAGCTGTGAC
CAGCAGGAAAAGATGCTCAACCTGGGTTTCACCATTGGCTCCTTCCTGCTGAGTGCTACCACACTGCCTC
TGGGAATTCTCATGGACCGCTTTGGGCCCAGGCCTCTTCGACTGGTGGGCAGTGCCTGCTTTGCCGCATC
CTGCACTCTAATGGCCTTGGCCTCCAGGGACACTGAAGTTTTGTCTCCATTGATATTCCTGGCACTGTCC
TTGAATGGATTTGCTGGCATCTGCTTAACGTTTACCTCACTCACGCTGCCCAACATGTTTGGGAATTTGC
GATCCACTTTCATGGCCCTCATGATTGGCTCCTATGCGTCTTCTGCCATCACGTTCCCTGGAATCAAGCT
GATCTACGATGCCGGAGTCCCCTTCACTGTCATCATGTTCACATGGTCTGGCCTGGCCTGTCTCATCTTT
TTGAACTGTGCTCTCAACTGGCCTGCAGAAGCCTTTCCTGCCCCTGAGGAAGTTGACTACACGAAGAAGA
TCAAACTCATTGGGTTAGCCTTGGACCACAAGGTCACAGGTGACCGCTTCTACACCCATGTAACCATTGT
GGGTCAGCGGCTGAGTCAGAAGTCCCCCAGCCTGGAGGAGGGCGCTGACGCCTTTATTTCATCCCCGGAT
ATCCCTGGTACCTCAGAGGAGACTCCTGAAAAGTCTGTCCCTTTTCGCAAGAGCCTCTGCTCCCCCATTT
TCCTGTGGAGCCTTGTCACCATGGGCATGACCCAGCTTCGGGTCATCTTCTATATGGGTGCTATGAACAA
GATCCTGGAGTTCATTGTGACTGGTGGCAAGGAACGTGAGACAAATGAGCAGAGACAGAAGGTGGAGGAG
ACAGTTGAGTTCTACTCTTCCATCTTTGGAGTCATGCAGCTGTTGTGTCTTCTCACCTGCCCCCTCATTG
GCTACATCATGGACTGGCGCATCAAGGACTGTGTGGATGCTCCAACGGAGGGCACCCTGAATGAGAATGC
TTCCTTTGGAGATGCCAGAGATGGGGCTAGCACCAAGTTCACTAGACCACGCTACCGCAAGGTACAAAAG
CTCACCAATGCCATCAATGCCTTCACCCTGACCAACATCCTGCTTGTGGGTTTCGGCATCGCCTGCCTCA
TCAAGAACTTACACCTGCAGTTGCTGGCCTTTGTCCTGCATACCATAGTTCGCGGTTTCTTCCACTCAGC
CTGTGGAGGTCTCTACGCTGCTGTGTTCCCGTCCAATCATTTTGGGACACTGACAGGTCTTCAGTCTCTC
ATCAGTGCCGTGTTTGCTCTGCTGCAACAGCTACTCTTCATGGCCATGGTGGGACCCCTGCATGGAGATC
CCTTCTGGGTGAACCTGGGCCTCCTACTTCTCTCGTTCCTGGGATTTCTCCTACCTTCCTACCTCTACTA
CTACCGGTCTCGCCTGCAGAGAGAGTATGCCACCAATTTGGTAGACCCACAGAAGGTGCTCAATACTTCG
AAGGTGGCTACATAG

Translation (564 aa):
MAPTLKQAYRRRWWMACTAVVENLFFSAVLLGWASLLIMLKKEGFYSSLCPAENRTNTTQDEQHQWTSCD
QQEKMLNLGFTIGSFLLSATTLPLGILMDRFGPRPLRLVGSACFAASCTLMALASRDTEVLSPLIFLALS
LNGFAGICLTFTSLTLPNMFGNLRSTFMALMIGSYASSAITFPGIKLIYDAGVPFTVIMFTWSGLACLIF
LNCALNWPAEAFPAPEEVDYTKKIKLIGLALDHKVTGDRFYTHVTIVGQRLSQKSPSLEEGADAFISSPD
IPGTSEETPEKSVPFRKSLCSPIFLWSLVTMGMTQLRVIFYMGAMNKILEFIVTGGKERETNEQRQKVEE
TVEFYSSIFGVMQLLCLLTCPLIGYIMDWRIKDCVDAPTEGTLNENASFGDARDGASTKFTRPRYRKVQK
LTNAINAFTLTNILLVGFGIACLIKNLHLQLLAFVLHTIVRGFFHSACGGLYAAVFPSNHFGTLTGLQSL
ISAVFALLQQLLFMAMVGPLHGDPFWVNLGLLLLSFLGFLLPSYLYYYRSRLQREYATNLVDPQKVLNTS
KVAT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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