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Report for CCDS38116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38116.1 Public Mus musculus 2 Rc3h2 23 108 98 CCDS HistoryNCBI Gene:319817Re-query CCDS DB by CCDS ID:38116.1Re-query CCDS DB by GeneID:319817See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100143.9 ENSMUSP00000097721.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100143.9Link to Ensembl Protein Viewer:ENSMUSP00000097721.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100143Re-query CCDS DB by Protein ID:ENSMUSP00000097721
Original member Current member EBI ENSMUST00000112936.3 ENSMUSP00000108558.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112936.3Link to Ensembl Protein Viewer:ENSMUSP00000108558.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112936Re-query CCDS DB by Protein ID:ENSMUSP00000108558
Original member Current member NCBI NM_001100591.1 NP_001094061.1 Accepted alive Link to Nucleotide Sequence:NM_001100591.1Link to Protein Sequence:NP_001094061.1Re-query CCDS DB by Nucleotide ID:NM_001100591Re-query CCDS DB by Protein ID:NP_001094061Link to BLAST:NP_001094061.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094061.1 1187 P0C090 1187 100% 0 0

Chromosomal Locations for CCDS 38116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37375233 37375428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37376642 37376790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37376889 37376996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37377134 37377268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37377355 37377436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37377851 37377935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37378308 37378521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37378858 37379004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37381870 37382037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37382783 37383216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37385246 37385460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37389585 37389890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37398244 37398356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37399587 37399705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37399821 37399953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37400529 37400729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37405244 37405419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37409434 37409667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37411140 37411257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37414516 37414746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3564 nt):
ATGCCTGTGCAGGCAGCTCAATGGACAGAGTTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGA
ATGTGCACAAACCCATCAGTTTAGGTTGTTCACACACAGTTTGCAAGACCTGCTTGAATAAACTTCACCG
AAAAGCGTGTCCTTTTGACCAGACTGCCATAAACACAGACATTGATGTGCTCCCTGTCAACTTTGCACTT
CTTCAGTTAGTTGGAGCCCAGGTACCAGATCATCAGTCAATAAAGTTAAGTAATCTAGGTGAGAATAAAC
ACTATGAAGTGGCAAAAAAATGCGTAGAGGACTTGGCACTCTACTTAAAACCACTAAGTGGAGGTAAAGG
TGTAGCTAGTTTGAACCAGAGTGCCCTGAGCCGTCCAATGCAAAGGAAACTAGTTACACTTGTAAACTGT
CAACTGGTGGAAGAAGAAGGTCGTGTCAGAGCTATGCGAGCGGCCCGTTCACTAGGAGAAAGAACTGTGA
CAGAACTGATACTGCAGCACCAGAACCCTCAGCAGCTGTCTGCCAACCTGTGGGCTGCTGTCAGGGCTCG
AGGATGCCAGTTTCTAGGGCCAGCTATGCAAGAAGAAGCCTTGAAGTTGGTATTGCTGGCATTAGAAGAT
GGTTCTGCTCTCTCTAGGAAAGTTCTAGTACTTTTTGTTGTGCAAAGACTAGAACCAAGATTTCCTCAGG
CATCAAAAACAAGTATTGGCCATGTTGTGCAGCTATTGTACCGAGCTTCTTGTTTTAAGGTTACTAAAAG
GGATGAAGACTCTTCCCTGATGCAGCTAAAGGAGGAATTTCGGAGTTACGAGGCACTACGCAGAGAACAT
GATGCCCAGATTGTTCATATTGCCATGGAAGCAGGACTCCGTATTTCACCTGAGCAGTGGTCTTCACTGC
TGTATGGGGACTTGGCTCATAAATCACACATGCAGTCTATCATTGATAAGCTACAGTCTCCAGAATCATT
TGCAAAGAGTGTCCAGGAATTGACAATTGTTTTGCAGCGAACTGGTGACCCTGCTAATTTAAATAGGCTG
AGACCTCATTTAGAGCTTCTTGCAAACATAGACCCTAATCCAGATGCTGTTTCACCAACTTGGGAGCAAC
TGGAAAATGCAATGGTAGCTGTTAAAACAGTTGTTCATGGTCTTGTGGACTTCATACAAAATTATAGTAG
AAAAGGCCATGAGACACCTCAGCCACAGCCAAACAGCAAGTATAAAACTAGTATGTGCCGAGATTTACGA
CAACAAGGGGGTTGTCCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAAGTACC
GATTAAGGAACAAAAAGATGAGCGCGACTGTAAGAACATTTCCTCTTCTGAATAAAGTTGGTGTAAACAG
CACTGTCACAACCACAGCCGGAAATGTCATTTCTGTCATAGGAAGTACTGAAACAACTGGGAAAATTGTT
GCAAGTACAAATGGAATTTCAAATACAGAAAGCAGTGTTTCTCAGCTAATCCCACGAGGCACTGACAGTG
CAGTAAGGACTTTGGAGACTGTGAAGAAAGTCGGGAAGGTTGGCACTAATGCTCAGAATGCTGGGCCCTC
TGCAGAGTCCGTGTCTGAAAATAAAATTGGTTCTCCACCCAAGACTCCTGTAAGTAATGCAGCAGCTACC
TCCGCTGGGCCCTCTAATTTTGGAACAGAGCTGAATTCCCTGCCTCCCAAATCCAGCCCATTTCTAACTA
GAGTTCCAGTATATCCTCAGCATTCTGAAAGCATTCAGTATTTTCAAGATCCAAGGACTCAGATACCTTT
TGAAGTCCCACAATACCCACAAACAGGATACTACCCACCACCTCCAACGGTACCAGCTGGTGTGACTCCC
TGTGTTCCTCGCTTTGTGAGGTCCAGTAATGTTCCAGAGTCCTCCCTCCCACCTGCTTCCATGCCATATG
CTGATCATTACAGTACATTCTCCCCTCGAGATCGAATGAATTCTTCTCCTTACCAACCTCCTCCTCCGCA
GCAGTATGGACCAGTTCCTCCAGTACCCTCTGGAATGTATGCTCCGGTGTATGACAGCAGGCGCATCTGG
CGCCCAGCTATGTACCAACGAGATGACATTATTAGAAGCAATTCTTTACCTCCAATGGATGTGATGCACT
CATCTGTCTATCAGACATCTTTACGGGAAAGATACAACTCATTAGATGGATATTATTCAGTGGCTTGTCA
GCCACCGAATGACCCAAGGACAACTGTGCCTTTACCAAGGGAACCTTGTGGTCATTTGAAGACCAGTTGT
GAGGAACAGTTAAGAAGAAAGCCAGATCAGTGGACACAGTATCATACCCAGAAAACACCTGTCTCTTCAA
CTCTTCCTGTGGCCACACAGTCACCAACACCACCTTCTCCTCTATTCAGTGTAGACTTCCGATCGGATTT
CTCTGAGAGTGTGAGTGGCGCAAAATTTGAGGAAGACCATCTTTCCCATTATTCTCCCTGGTCTTGTGGT
ACCATAGGCTCTTGTATAAATGCCATTGATTCGGAGCCCAAAGACGTAATTGCTAATTCAAATGCTGTAT
TGATGGACCTGGACAGTGGGGATGTAAAGAGAAGAGTGCATTTATTTGAAGCTCAGAGAAGGACAAAAGA
AGAAGACCCAATTATTCCCTTTAGTGACGGACCCATTATCTCAAAATGGGGTGCAATTTCCCGATCCTCC
CGAACAGGTTACCATACAACAGATCCCGTCCAGGCAACTGCTTCCCAAGGAAGTGCAACTAAGCCCATCA
GCGTATCAGATTATGTCCCTTACGTGAATGCTGTCGATTCAAGGTGGAGTTCATATGGCAACGATGCTAC
ATCATCAGCACACTATATTGAACGGGACAGATTCATTGTTACTGATTTATCTGGTCATAGAAAGCATTCT
AGTACCGGAGACCTTTTGAGCATTGAACTTCAGCAGGCCAAGAGTAACTCATTACTTCTTCAGAGGGAAG
CTAATGCTCTGGCCATGCAACAAAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACTTTAAATCTTCT
AAGCAAGGAAATTGAACTAAGAAATGGAGAGAATGACTACACAGAAGACACTGTAGATACAAAGCCTGAT
AGGGATATTGAGTTAGAGCTTTCAGCCCTTGATACTGATGAACCTGATGGCCAGAGTGAACAAATTGAAG
AAATTTTGGACATACAACTTGGTATCAGTTCTCAAAATGACCAGTTGCTCAATGGAACAGCAGTGGAAAA
TGGTCATCCAGCCCAGCAGCACCAGAAGGACCCAGGAAAGCCGAAGAGACAGAGTTTAGGTGAAGACCAT
GTGATTCTGGAGGAGCAAAAACCAATTCTGCCGGTAACATCTTGCTTTAGCCAGCCACGTCCAATGTCTA
TTAGCAGTGCAAGCTGCCTCCCCATCACCACATCTGTCAGTGTTGGCAACCTCATTCTGAAAACTCACGT
TATGTCTGAAGATAAAAACGACTTTTTAAAACCTATTGCAAATGGGAAGATGGTTAACAGCTGA

Translation (1187 aa):
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFAL
LQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVASLNQSALSRPMQRKLVTLVNC
QLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLVLLALED
GSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREH
DAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRL
RPHLELLANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKMSATVRTFPLLNKVGVNSTVTTTAGNVISVIGSTETTGKIV
ASTNGISNTESSVSQLIPRGTDSAVRTLETVKKVGKVGTNAQNAGPSAESVSENKIGSPPKTPVSNAAAT
SAGPSNFGTELNSLPPKSSPFLTRVPVYPQHSESIQYFQDPRTQIPFEVPQYPQTGYYPPPPTVPAGVTP
CVPRFVRSSNVPESSLPPASMPYADHYSTFSPRDRMNSSPYQPPPPQQYGPVPPVPSGMYAPVYDSRRIW
RPAMYQRDDIIRSNSLPPMDVMHSSVYQTSLRERYNSLDGYYSVACQPPNDPRTTVPLPREPCGHLKTSC
EEQLRRKPDQWTQYHTQKTPVSSTLPVATQSPTPPSPLFSVDFRSDFSESVSGAKFEEDHLSHYSPWSCG
TIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFEAQRRTKEEDPIIPFSDGPIISKWGAISRSS
RTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNDATSSAHYIERDRFIVTDLSGHRKHS
STGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDEGRHLTLNLLSKEIELRNGENDYTEDTVDTKPD
RDIELELSALDTDEPDGQSEQIEEILDIQLGISSQNDQLLNGTAVENGHPAQQHQKDPGKPKRQSLGEDH
VILEEQKPILPVTSCFSQPRPMSISSASCLPITTSVSVGNLILKTHVMSEDKNDFLKPIANGKMVNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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