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Report for CCDS38053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38053.1 Public Mus musculus 2 Etl4 23 108 98 CCDS HistoryNCBI Gene:208618Re-query CCDS DB by CCDS ID:38053.1Re-query CCDS DB by GeneID:208618See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 38053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114627.7 ENSMUSP00000110274.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114627.7Link to Ensembl Protein Viewer:ENSMUSP00000110274.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114627Re-query CCDS DB by Protein ID:ENSMUSP00000110274
Original member Current member NCBI NM_001081006.1 NP_001074475.1 Accepted alive Link to Nucleotide Sequence:NM_001081006.1Link to Protein Sequence:NP_001074475.1Re-query CCDS DB by Nucleotide ID:NM_001081006Re-query CCDS DB by Protein ID:NP_001074475Link to BLAST:NP_001074475.1

Chromosomal Locations for CCDS 38053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 20290007 20290041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20339922 20340109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20529959 20530242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20661898 20662096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20709405 20709603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20713355 20713448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20743459 20744291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20759547 20759651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20760215 20760264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20766445 20766611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20778026 20778201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20780942 20781072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20781798 20781945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20785044 20785500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20788428 20788611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20797877 20798031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20798616 20798783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20801542 20801661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20805585 20805662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20805775 20807373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20807902 20808024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20808710 20809210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5994 nt):
ATGTCACTCTGTCCTCCACCCTGTTGTCTTCTTAGATCCTTCTTTACAAACGCAGCTGCTAAGTTGCCGT
CCTCTAAGAAGGATGATTTAAGCAGCAAGCAGAAGAAAACCAGCCGAGGTGACAAGACAGAGAGAATTGG
AAGCGAAGGAAACTTGACAGAGTATCAGCAGGTGCAGGCTGCAGCAACTTCAGCTCAGAGGAAGGCAGCG
GCGGCTCACAAAGAACAAGGGAGAAGCAATCTTCATGTAACATCTCAGGAAGATGCAGCATGCCGCAGGC
CCAGGGAACGCCTTTCTAATGGAAACGCCAGGGCTCAGGTTTCCAAGCCTGCCCGAAATATCCCAAGGAG
ACACACTCTAGGTGGGCCCCGAAGTTCCAAAGAGATCCTGGGAATGCAGCCATCTGAGATGGACAGGAAG
AGAGAGGCGTTCCTAGAACATCTAAAGCAGAAGTACCCCCACCATGCCACAGCCATCATGGGCCACCAGG
AGAGGCTGAGGGACCAGACAAAAAGTCCCAAGCTGTCCCACAGTCCTCAACCTCCCAATTTGGGGGATCC
GGTTGAACATTTATCAGAGACATCTGGTGACTCTTTGGAAGCCATGTCCGAGGGAGAAGTACCGAGTCCT
TTCGCCAGAGGCAGTCGTACTCGCGCGAGCCTTCCCGTGGTGAGGTCGGCCAATCAAACAAAGGAAAGAT
CCCTGGGTGTCCTCTACCTCCAGTATGGAGACGAAACCAAACAGCTGCGGATGCCGAATGAAGTCACAAG
CACAGACACAATCCGAGCTCTCTTCGTCAGTGCCTTTCCCCAGCAGCTCACCATGAAGATGCTGGAGTCG
CCCAGTGTTGCCATCTACATCAAGGATGACAGCAGAAATGTCTACTATGAGTTAAATGATGTGAGGAATA
TCCAAGACAGATCCCTTCTCAAAGTATACAACAAGGATCCTTCACATGCATTTAACCACATGACGAAAGC
CGTGAACGGAGACATGAGGATGCAGAGAGAAATTGTTTATGCAAGAGGAGATGGGCTTGTTGCCCCCCGA
CCAGGATCTGTGGCTCACCCACCTCATGTAATTCCAAACTCCCCACCATCAACTCCGGTGCCCCATTCCT
TACCTCCCTCTCCATCCAGAATTCCTTACGGGGGCAGCCGTCCAATGGCTATTCCTGGCAATGCCACCAT
CCCCAGGGACAGACTCTCGAGCCTGCCAGTATCCAGATCCATCTCCCCAAGCCCCAGCGCCATTTTGGAA
AGAAGAGATGTCAAACCGGATGAAGACATGAGCAGCAAAAACCTGGTTATGTTCAGAAATGAGGGTTTCT
ATGCCGACCCTTACCTCTATCATGAAGGACGAATGAGCATAGCCTCATCCCATGGCGGCCACCCTTTGGA
TGTCCCAGATCATGTCATTGCGTATCACCGCACAGCGATCCGGTCAGCGAGTGCTTACTGTAGCCCTTCC
TTGCAAGCAGAAATGCATATGGAGCAGTCGTTATACAGACAAAAGTCAAGGAAATACCCTGATAGCCATT
TGCCTACCTTGGGCTCCAAAACGCCCCCAGCCTCTCCACACCGTGTGGGTGACTTAAGAATGATAGACCT
GCACCCGCATCTTAACACACATGGGCCCCCTCACACTCTGCAGCCAGACCGGGCCTCCCCCAGTCGCCAG
TCCTTTAAAAAGGAACCCGGCACCCTGGTGTACATCGAAAAGCCACGAAACACTTCAGGATTATCCAGCC
TTGTAGACCTGGGGCCTCCTCTAGTTGAGAAGCAAGGTTTTGCTTACAGCACCACTACAATCCCCAAAGA
CAGAGAAACCAGAGAGAGGATGCAAGCCATGGAGAAGCAGATTGCCAGTCTAACTGGCCTTGTTCAGTCT
GCGCTTTTTAAAGGGCCCATTACAAGTAGTAGCAAAGAGGCGTCTAGTGAGAAAATGGTGAAAGCCACAG
CCAACAGGAACCAAGCAGATGGTGCAGGAACGGCCCATGTTTCTGCAGGGAAGGTTCTGGGCTCTGTGGA
GTTCTCCCTGCCGCCCAGCCAACCCCTGCCTGCCGGAACCTCGCCCATCCACACTAGCCTGCTTGACATG
AGGAGGAACGTGGCTGAACTCAGGCTCCAACTCCAGCAGATGAGGCAGCTCCAGCTGCAGAACCAGGAGA
TTCTGAGGGCGATGATGAAGAAGGCTGAGCTGGAAATCAGTAACAAAGTGAAGGAGACCATGAAGAGACT
AGAGGATCCGGTACAGCGTCAGCGCACCCTGGTGGAGCAAGAGAGACAGAAGTACCTCCACGAAGAAGAG
CGGATTGTCAAAAAGTTATGTGAGCTGGAGGACTTTGTTGAGGACTTGAAGAAGGACTCTTCCTCCACTG
GCAGAGTGGTGACCCTGAAAGATGTGGAAGATGGGGCTTTCCTCCTGCGACAAGTGGGAGAAGCTGTGGC
CACTCTCAAAGGAGAATTTCCAACTTTGCAAAATAAGATGCGTGCTGTCCTGCGCATAGAAGTTGAGGCA
GTAAGGTTCCTGAAGGAAGAGCCACACAAGCTGGACAGTCTCCTGAAGCGTGTGAGGAGCATGACAGATG
TCTTGACGATGTTGCGGAGGCATGTCACTGATGGGCTCCTGAAAGGCACCGATGCATCCCAGGCTGCACA
GTATGTTGCCATGGAGAAGGCCACAGCTGCAGAGGTCCTGAAGCATCAGGAAGAGACAGCCCATGCCCCT
GGGCAACCCCTCCACTGTAGCACTGGAAGCCCTGGCGATGTGAAGTCAGAAGTGGTGCCCCTATCCACCA
TGACAGTTCACCATGTACAGAGCTCGCCTGTGGTCATGCAACCTTCCCAGCACTCCTCAGCCTTGATGAA
CCCAGCCCAGAACTTGCCTGGAGGAACCAGACCTCACACAGCCAGCCCTCCAGCAATCACACAGGAAGTA
ACCTCTGCCCAGTCAGCTCCAGGCCCCCAGTCCCCTCAGACCCCAGTGAATGGTTCCTCCATGCAGAGCT
TGTTCATTGAGGAAATTCACAGTGTGAGTGCCAAGAACAGGGCAGTGTCCATTGAGAAGGCAGAAAAGAA
ATGGGAAGAAAAAAGGCAAAATCTGGAACACTATAACGGAAAGGAGTTCGAGAAGCTCCTGGAGGAAGCT
CAGGCCAACATCATGAAGTCAATTCCAAACCTGGAGATGCCCCCAGCTTCCAGCCCAGTGTCAAAGGGAG
ATGCGGCAGGGGATAAGCTGGAGCTGTCAGAAGATTCTCCAAATTCAGAGCAGGAATTGGACAAGATAGG
GGGAAAGTCACCCCCTCCTCCACCCCCACCCCCTCGGAGAAGCTACCTTCCTGGATCAGGACTTACCACC
ACGAGATCAGGCGATGTGGTCTACACTGGCAGGAGCATGTCTAAGGTGAGCAGTGAAGACCCTGGGCCAA
CACCACAGACTAGAGCCACAAAATGTCCCCCGGAGGAACCTGCCTCAGCCTGGGCCCCATCCCCACCACC
AGTCCCTGCCCCTTCCTCCAAGGAGGAGGAGGAAGAAGAAGAAGAAGGAGACAAAATCATGGCAGAACTC
CAGGCATTCCAGAAGTGTTCCTTTATGGATGTAAATCCAAACAGTCATGCTGAGCAGTCCCGAGCTAACA
GCCACCTTAAAGACACTAGGGCAGGCGCCACAGCCCCACCCAAGGAGAAGAAGAATTTGGAATTTTACCA
CGAAGATGTACGAAAATCTGATGTTGAATGTGAAAATGGCCCCCAAGTGGAATCTCAAAAGGTTACTGCA
GGGGCTCTGAGACCTAGTGGCCCCCCCAAATGGGAAAGAGTCATGGTGGATAGTATATCTGACACCTCAA
GAACATCAGAATGTAGAGCTGACACCTTCACAGAGGAAAATGCCACACCCAATAAGAGCTTATTCAGAGA
CAGTAGAAATTATTCCCAGAAAAATGTGCCTAAGGTCAGTTTTTCTTCCTCTGGCCTGAACTCATTAGAA
GGTGAAATCAACAAAGGGCCTAATGTCTCGGGACTACAGTGTGCTATTCCTGACTTGGAAAATCAGAAGT
TAAATTTTGGAAAGACAAAAGAGATAGGCCAACAGGGACAAGAAAATGCAGACAAGAGTCACATTCCTCT
CCCAACTCGATCAGCAGAATTCAGTATTCATGATGTCAAAACACAAGATCAAGATGTTCCCGTGACAGGT
TATGGCCAAGTTGTCCTGAGATCGAAGGTGGGTAGGCACGCTAATATGAACATGAATGAGGATGGAGAAT
CAACTCCAAGTTCTCCCAGTGAGGAACACACAGCCACTGATAACATCGCCTTTATGATCACCAAAACTGC
TGTCCAGGTTCTGTCCAGCGGGGAGGTCCATGACATAGTGAGTCAAAAAGGACAAGATGTACAGACAGTT
AATATTGATGGAAGGAAAGAGACAGCCTCTCAGCACGAAGGGACAGAAGGGGAAGAACCGGTTGTGTGCC
TGGACAAGAAACCAGTTATTATCATTTTTGATGAACCCATGGACATCCGATCTGCATATAAAAGACTCTC
AACCATCTTTGAGGAATGCGATGAGGAGCTAGAGAGAATGCTGACAGAGGAAAAGATAGAGGAAGAGGAA
GAGGATGAAAACGAAGACTCTGGAGTCCGAACCTCATCCCAAATGTCCTGTGAACAGGTCGACTCGAGAA
GTGATAGGATGGGACAAAAGGCAGAGACACAGTCACAGCCCCATGTCCTGTCAGCAGAGTTGCTAACTCC
AGGAGTGCAGGGGGTTCGTAAAGCCGAGCAGAGAAAGCTTAGCTCAGCTGATTCTCCAGACTCAGGGAAT
AAGTGTGGCATGGTTGATGACCAGTTTGAAAGTCCCAAGAAAAAGTTTAAGTTCAAATTCCCTAAAAAGC
AGCTTGCTGCTCTTACACAGGCAATTCGCACAGGCACCAAAACGGGAAAGAAAACCCTGCAGGTGGTTGT
CTATGAGGAAGAGGAAGAGGACGGTACTTTGAAACAGCACAAAGAAGCCAAGCGGTTTGAAATCACCAGG
TCACAGCCTGAAGATGCCCTCAAAACCATGGCTAGGAGGCAAGAGCAGCTCAGCCCTGAGGGCACCCTTC
CGGCATCAAGGACTGATGAAATTAGGAAAAGTACTTACAGAACACTGGACAGCCTGGAGCAGACCATAAA
GCAACTTGAAAATACAATCAGTGAAATGAGCCCCAGGGCCCTAGTTGATACCTCATGTTCTTCCAACAGA
GATTGTGGTGCAAGCTTGCCCCACATGGCCCAAGAGGTCTCTCCCCGGTCCTTGCTAGTTCTGGATGAAG
TACCCCCTGCCCCAGAGCCCCCCACATCCATATCTCCAGCTTCACGTAAGGGCTCCAGCACCACCCCACA
GACAAGCCGGATGCCAGTCCCCATGACTTCCAAGAACAGACCCGGAAGCCTGGATAAGGCCAGCAAGCAG
TCCAAACTACAGGATCCCCGCCAATACCGTCAGGCTAATGGAAGTGCTAAGAAAGCTGGTGGGGACTGTA
AGCCTACTTCCCCCTCCTTACCTGCTTCTAAGATTCCAGCCCTTTCTCCCAGCTCTGGGAAAAGCAGTTC
TCTGCCTTCCGCTAGTGGGGACAGCTCTAACCTCCCCAATGCACCTGCTACTAAACCATCGATTGCTTCT
ACCCCTCTCAGCCCCCAAGCAGGACGGTCCGCTCACTCCGCTTCCCTCATCCCTTCTGTCTCTAATGGCT
CCTTAAAGTTTCAGAGCCCACCTCACGCAGGTAAAGGCCATCATCACCTTTCGTTCGCACTGCAGACTCA
AAATGGCCGAGCTGCCCCTACTACCTCTTCCTCCTCATCCCCTCCTTCCCCTGCCTCCCCCACCTCCCTG
AATCAAGGTGCCAGGGGCATCAGGACCATCCATACTCCTAGCCTCGCCAGCTACAAAGCACAGAATGGAA
GTTCAAGCAAAGCCACCCCATCCACAGCAAAAGAAACGTCTTAA

Translation (1997 aa):
MSLCPPPCCLLRSFFTNAAAKLPSSKKDDLSSKQKKTSRGDKTERIGSEGNLTEYQQVQAAATSAQRKAA
AAHKEQGRSNLHVTSQEDAACRRPRERLSNGNARAQVSKPARNIPRRHTLGGPRSSKEILGMQPSEMDRK
REAFLEHLKQKYPHHATAIMGHQERLRDQTKSPKLSHSPQPPNLGDPVEHLSETSGDSLEAMSEGEVPSP
FARGSRTRASLPVVRSANQTKERSLGVLYLQYGDETKQLRMPNEVTSTDTIRALFVSAFPQQLTMKMLES
PSVAIYIKDDSRNVYYELNDVRNIQDRSLLKVYNKDPSHAFNHMTKAVNGDMRMQREIVYARGDGLVAPR
PGSVAHPPHVIPNSPPSTPVPHSLPPSPSRIPYGGSRPMAIPGNATIPRDRLSSLPVSRSISPSPSAILE
RRDVKPDEDMSSKNLVMFRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDHVIAYHRTAIRSASAYCSPS
LQAEMHMEQSLYRQKSRKYPDSHLPTLGSKTPPASPHRVGDLRMIDLHPHLNTHGPPHTLQPDRASPSRQ
SFKKEPGTLVYIEKPRNTSGLSSLVDLGPPLVEKQGFAYSTTTIPKDRETRERMQAMEKQIASLTGLVQS
ALFKGPITSSSKEASSEKMVKATANRNQADGAGTAHVSAGKVLGSVEFSLPPSQPLPAGTSPIHTSLLDM
RRNVAELRLQLQQMRQLQLQNQEILRAMMKKAELEISNKVKETMKRLEDPVQRQRTLVEQERQKYLHEEE
RIVKKLCELEDFVEDLKKDSSSTGRVVTLKDVEDGAFLLRQVGEAVATLKGEFPTLQNKMRAVLRIEVEA
VRFLKEEPHKLDSLLKRVRSMTDVLTMLRRHVTDGLLKGTDASQAAQYVAMEKATAAEVLKHQEETAHAP
GQPLHCSTGSPGDVKSEVVPLSTMTVHHVQSSPVVMQPSQHSSALMNPAQNLPGGTRPHTASPPAITQEV
TSAQSAPGPQSPQTPVNGSSMQSLFIEEIHSVSAKNRAVSIEKAEKKWEEKRQNLEHYNGKEFEKLLEEA
QANIMKSIPNLEMPPASSPVSKGDAAGDKLELSEDSPNSEQELDKIGGKSPPPPPPPPRRSYLPGSGLTT
TRSGDVVYTGRSMSKVSSEDPGPTPQTRATKCPPEEPASAWAPSPPPVPAPSSKEEEEEEEEGDKIMAEL
QAFQKCSFMDVNPNSHAEQSRANSHLKDTRAGATAPPKEKKNLEFYHEDVRKSDVECENGPQVESQKVTA
GALRPSGPPKWERVMVDSISDTSRTSECRADTFTEENATPNKSLFRDSRNYSQKNVPKVSFSSSGLNSLE
GEINKGPNVSGLQCAIPDLENQKLNFGKTKEIGQQGQENADKSHIPLPTRSAEFSIHDVKTQDQDVPVTG
YGQVVLRSKVGRHANMNMNEDGESTPSSPSEEHTATDNIAFMITKTAVQVLSSGEVHDIVSQKGQDVQTV
NIDGRKETASQHEGTEGEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMLTEEKIEEEE
EDENEDSGVRTSSQMSCEQVDSRSDRMGQKAETQSQPHVLSAELLTPGVQGVRKAEQRKLSSADSPDSGN
KCGMVDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEEDGTLKQHKEAKRFEITR
SQPEDALKTMARRQEQLSPEGTLPASRTDEIRKSTYRTLDSLEQTIKQLENTISEMSPRALVDTSCSSNR
DCGASLPHMAQEVSPRSLLVLDEVPPAPEPPTSISPASRKGSSTTPQTSRMPVPMTSKNRPGSLDKASKQ
SKLQDPRQYRQANGSAKKAGGDCKPTSPSLPASKIPALSPSSGKSSSLPSASGDSSNLPNAPATKPSIAS
TPLSPQAGRSAHSASLIPSVSNGSLKFQSPPHAGKGHHHLSFALQTQNGRAAPTTSSSSSPPSPASPTSL
NQGARGIRTIHTPSLASYKAQNGSSSKATPSTAKETS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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