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Report for CCDS38049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38049.1 Public Mus musculus 2 Tmem236 23 108 98 CCDS HistoryNCBI Gene:625286Re-query CCDS DB by CCDS ID:38049.1Re-query CCDS DB by GeneID:625286See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077517.8 ENSMUSP00000076722.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077517.8Link to Ensembl Protein Viewer:ENSMUSP00000076722.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000077517Re-query CCDS DB by Protein ID:ENSMUSP00000076722
Original member Current member NCBI NM_001081310.2 NP_001074779.1 Accepted alive Link to Nucleotide Sequence:NM_001081310.2Link to Protein Sequence:NP_001074779.1Re-query CCDS DB by Nucleotide ID:NM_001081310Re-query CCDS DB by Protein ID:NP_001074779Link to BLAST:NP_001074779.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074779.1 344 A2ARJ3 344 100% 0 0

Chromosomal Locations for CCDS 38049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 14174590 14174840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14192254 14192326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14195950 14196091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14218868 14219436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGCTTCTGGCAAAATAATCAAGCTGGTGGTTTTTGAGCTTCTTGAGTTTGCTGCCTTCTCCATTCCTA
CCCTTGTGATAATGGAACAGTTTGCGACTGCCAATCAGCGAACAAAGTCTGAAAGGACTCACTATTGGCT
CATTGTTTCCTGTTCCATCGCCTATGTGGCTGTAGTGAGTCTCTTGATTTGGGTTCCGGTAAAAGTTGTC
CTATACAAGAAACGGCATCTTTACAAGAAAATTATAGGATGGCGACCTGTTCTGGTGATGTGTGTTGTGC
TCACCACTCTCCCCAGCTTCAGCTTCTCCATAGCAGTCACCGAGGTTCAAAAGAATATCAATGGCTCAGC
TAATTCGTTGCCTGAATCCTTACCTGATCTGCCAGTATCTCTGGTTCTGTTGTCCCTGATTGTGGTTGAC
ATTATTGAAAAACTCAGGCAATATCCTCTAAGAGGCAGTCAAAAGGGTTATGAAGACAATGACATCTGTA
TAACCTCGTTGCAACAGATAAAAACCGTGACAGAACAGGTAGTTCAGAGTGACGGAAATCCTGCATCTGC
CCAGGCGGCCAAGCCCACTGCGATGTCCCAGCCCCGGAACCATGTGGCAGTGCTTGCCGGGCCCCTGGAG
CCCTCCTTTCAGTCTAGGATCCTTAGGACGATGTCTCAAAGAGATGTTCGGGCGGAGCTGTTCCTGCGAA
GCTTCCTCATGTGGGCCGACACGGTGGAAATGCTGCGTGTGGCTGGGCACCAGGCGGTGTACAAGTCAGC
CTGGCTGTACCCGGTCTACATATTCAGTTTTATCTCTCTCCTGAGAATGGTCTTCACTCCTAAGAATCCT
CTCCTTAATTCCCTGGGGATCTTGATGCAAGATTTGCCCTTTGTTTTTCTTAGACTCAGTTTAATCCTTG
CCCTGGGAACGATCACGCCAGTACTGGGCCTTTGTAAAAATGTCCTAGTGACTATATCCTATATCTACTT
CAATTATGTAACCAAACTCAGGCCTTTCTCTGCCTTTGAAACCTCTCCATTTTAA

Translation (344 aa):
MASGKIIKLVVFELLEFAAFSIPTLVIMEQFATANQRTKSERTHYWLIVSCSIAYVAVVSLLIWVPVKVV
LYKKRHLYKKIIGWRPVLVMCVVLTTLPSFSFSIAVTEVQKNINGSANSLPESLPDLPVSLVLLSLIVVD
IIEKLRQYPLRGSQKGYEDNDICITSLQQIKTVTEQVVQSDGNPASAQAAKPTAMSQPRNHVAVLAGPLE
PSFQSRILRTMSQRDVRAELFLRSFLMWADTVEMLRVAGHQAVYKSAWLYPVYIFSFISLLRMVFTPKNP
LLNSLGILMQDLPFVFLRLSLILALGTITPVLGLCKNVLVTISYIYFNYVTKLRPFSAFETSPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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