NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37930.1 Public Mus musculus 19 Ostf1 23 108 98 CCDS HistoryNCBI Gene:20409Re-query CCDS DB by CCDS ID:37930.1Re-query CCDS DB by GeneID:20409See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025631.6 ENSMUSP00000025631.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025631.6Link to Ensembl Protein Viewer:ENSMUSP00000025631.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025631Re-query CCDS DB by Protein ID:ENSMUSP00000025631
Original member Current member NCBI NM_017375.3 NP_059071.1 Accepted alive Link to Nucleotide Sequence:NM_017375.3Link to Protein Sequence:NP_059071.1Re-query CCDS DB by Nucleotide ID:NM_017375Re-query CCDS DB by Protein ID:NP_059071Link to BLAST:NP_059071.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059071.1 215 Q62422 215 100% 0 0

Chromosomal Locations for CCDS 37930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18581270 18581328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18584642 18584743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18586547 18586625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18589705 18589754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18590401 18590508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18592583 18592636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18593856 18593919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18596351 18596401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18604166 18604212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18631620 18631653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGTCCAAGCCACCTCCCAAACCGGTCAAACCAGGGCAAGTTAAAGTCTTCAGAGCTCTATATACATTTG
AACCCAGAACTCCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATGAGTGATAC
CAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCGAGCAACTATGTGGCTGAGCAGGCA
GAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAGGCAACCTGAGCTGGTTGAGGGAGTGCTTGG
ACAACCGGGTGGGTGTGAACGGCCTGGACAAAGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGG
CCATAAAGACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAGAATAAGCTGGGA
GACACAGCTCTGCACGCGGCTGCCTGGAAGGGTTATGCAGACATTGTCCAGTTGCTACTGGCAAAAGGTG
CGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATC
GCTCCTGAAGAAGAAGCAGCAGGGAACAGATGGGGCTCGAACGTTAAGCAACGCCGAGGACTACCTCGAT
GACGAAGACTCAGACTGA

Translation (215 aa):
MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTSWWKGTCKGRTGLIPSNYVAEQA
ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEVLFTQPNVELNQQNKLG
DTALHAAAWKGYADIVQLLLAKGARTDLRNNEKKLALDMATNAACASLLKKKQQGTDGARTLSNAEDYLD
DEDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH