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Report for CCDS37924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37924.1 Public Mus musculus 19 Patl1 23 108 98 CCDS HistoryNCBI Gene:225929Re-query CCDS DB by CCDS ID:37924.1Re-query CCDS DB by GeneID:225929See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061618.8 ENSMUSP00000060398.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061618.8Link to Ensembl Protein Viewer:ENSMUSP00000060398.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061618Re-query CCDS DB by Protein ID:ENSMUSP00000060398
Original member NCBI NM_172635.3 NP_766223.2 Updated not alive Link to Nucleotide Sequence:NM_172635.3Link to Protein Sequence:NP_766223.2Re-query CCDS DB by Nucleotide ID:NM_172635Re-query CCDS DB by Protein ID:NP_766223
Current member NCBI NM_172635.4 NP_766223.2 Accepted alive Link to Nucleotide Sequence:NM_172635.4Link to Protein Sequence:NP_766223.2Re-query CCDS DB by Nucleotide ID:NM_172635Re-query CCDS DB by Protein ID:NP_766223Link to BLAST:NP_766223.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766223.2 770 Q3TC46 770 100% 0 0

Chromosomal Locations for CCDS 37924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11912563 11912577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11914348 11914459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11920178 11920395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11920805 11920885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11921369 11921563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11922467 11922568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11923387 11923476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11923801 11924018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11925137 11925226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11929875 11930055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11931533 11931656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11932138 11932235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11933680 11933739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11935679 11935827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11937220 11937379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11939684 11939839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11942629 11942720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11942825 11942974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11943331 11943352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGTTCCGCTACGAGTCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAG
AA
GAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTGATGATGATTGGCA
G
GAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAAT
GGA
GAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGG
TG
ATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAACCTCA
A
CCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTT
GCT
CAGGAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAG
AT
GATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGT
T
AGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAGATCCTGTGT
CCG
AAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTC
CA
AACCAGCTCTGCAGTGTCCCGAACTCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGT
A
CTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAGCTACAGCCTGGACGAATGTCTCCCAGC
CAG
TTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGC
GC
GTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCC
A
CCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAGACCTCAGGCCCCAATGTTT
AGA
GCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAA
A
T
CAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCG
G
AAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAG
CTG
CAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGAATTACTTTGAAAAACTGGAGAAATTGT
CA
GCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGC
C
AAACTGGAGCATGCTTATCAGCCTGTGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTG
AAT
AATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGATGAAACAAAAGAAAAAC
AA
GTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAAACCTATAGTTTACTCCTTGATGTGGA
G
GATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCAC
AAA
ATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAGGCCAAGTGATGACCACT
TT
GTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGA
G
CAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGAT
GAG
GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCA
GC
CTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCAC
T
GCTGTGCTCCAGAACAAGTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAG
AGT
TCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTGGACAGAGGTGATGTTCATGGCAACCCGAG
AA
CTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTT
T
TCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATACGG
TAA


Translation (770 aa):
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKLPVAADEQTGN
G
ERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQ
PQPGSLNSSIWDGSEVLRRIRGPLL
A
Q
EMPTVSVLEYALPQRPLQGPEDDRDLSERALPRRSTSPIIGSPPVRAVPIGTPPKQMAVPSFNQQILC
P
KPVHVRPPMPPRYPAPYGERISPNQLCSVP
NSSLLGHPFPPNVPPVLSPLQRAQLLGGAQLQPGRMSPS
Q
FARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPSFRAFFSAPPPATPPPQQHPPGPGPHLQNL
RPQAPMF
R
ADTTHLHPQHRRLLHQRQLQSR
NQHRNLNGTGDRGGHQSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
L
QSTDPYLDDFYYQ
NYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYQPVQFEGSLGKLTVSSV
N
NPRKMIDAVVTSRSEDD
ETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDERKH
K
ICSMYDNLRGKLPGQE
RPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMATARNLPFLIKKDAQD
E
VLPCLLSPFSLLLYHLPSVTVTSLLQQLMNLPQSASAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLQ
S
SDPAIESTQNNQ
WTEVMFMATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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