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Report for CCDS37896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37896.1 Public Mus musculus 19 Sac3d1 23 108 98 CCDS HistoryNCBI Gene:66406Re-query CCDS DB by CCDS ID:37896.1Re-query CCDS DB by GeneID:66406See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113533.2 ENSMUSP00000109161.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113533.2Link to Ensembl Protein Viewer:ENSMUSP00000109161.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113533Re-query CCDS DB by Protein ID:ENSMUSP00000109161
Original member Current member NCBI NM_133678.3 NP_598439.3 Accepted alive Link to Nucleotide Sequence:NM_133678.3Link to Protein Sequence:NP_598439.3Re-query CCDS DB by Nucleotide ID:NM_133678Re-query CCDS DB by Protein ID:NP_598439Link to BLAST:NP_598439.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598439.3 427 A6H687 427 99.7658% 0 1

Chromosomal Locations for CCDS 37896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6116094 6116587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6117797 6118586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGGGACGATTTAAGGGGGAAAACCGAAGCCAGGCGCGATGGATTATGGGAGGCGTTTCTAAAGGCCGCG
GGAGCGGCAAATCGAGAAAGCCGCGGCAGGCTGCGTTTGGCCAGACTGGGGCTCGAGTCTGTCCCTCGAG
CCCACGGCAGGATGCAGTGCCGCGCTTCCGCTGGCCCGGCGATGCTGAGTGTGCGTCCTCTACCCACACC
CCTACCATGTCCGGCTGCAAACTACCCATGGGCCTGTGCCCAGACATGTGCCCGGCCGCCGAGCGCGCCC
GACGCGAGCGCGAGCGCCGCCTGCACCGACTGGAGGTGGAGCCAGGCGGCCGTGGGAACGCTCCCCGAGC
CGACCCCAAGCGCACAGTGAAGGAGTACAGCCGGCCGGCAGCGGGCAAACCCCGGCCCCCGCCAAGCCTG
CTGCGGCCGCCGCCAGTGCTCTTAGCCACCGTGCGTTATCTGGCCGGTGAGGTGGCTGGCCGCGGCGACG
TGTCGTGCGCGGAGGTGGCGAGCTTTGTGGCCGACCGCCTGCGCGCAGTGCGGCTAGATCTGTCGCTGCA
GGGCGTGGACGACGCGGACGCAGCGACAGTGCTGGAGGCTGCGCTGGCCACGCTGCTGGCCGTGGTGGCG
CGGGTGCGGCCAGAAGAGACGCGCGGAGCCGCGGACCCGGTGCTGCTTCAGACTCAGGTGCAGGAAGGCT
TCGGTTCGCTGCGGCGCTGCTACGCGCGGGGCAAAGGCCCCTACCCCCGCCAGGCTGCTTTTCAGGGCCT
CTTTCTGCTCTACAACTTGGGTTCTGTGGAAGCCCTGCAGGAGGTTCTACAGCTGCCTGCTGCCCTGCGT
GCCTGCCCACCCCTTCAGGCGGCGTTGGCTGTTGACGCTGCCTTCCGGGAAGACAACCATGCCCGACTGT
TTCGCCTGCTTCGCACCTTACCCTACCTACAGAGCTGCGCAGTGCAGGAACACATTGGGTATGCCCGCCG
CAAAGCTCTAGCCCGCCTGTCCCGTGCCCTGAGCACTCCTAAGGGACAGACCTTGCCTTTGGACTTCATA
GAACACTTTCTGGCCCTGGATGGACTCCAGGAAGCACGGGACCTGTGCCAGGCCCATGGACTGACCTTGG
ATAAAGACAGAGTTGTATTCCTGAGGGGTCAATACTCTGAGGAAGGACTCCCACCCCCTGGTGCCTACCA
CATATTAGTGGGGAATAAGTTGCAGGGACACACCCTGGAAGATGTGGTCATGGCTGAGGAAGGTGACATT
CACAGACCTGGCTCTGCAGCTTGA

Translation (427 aa):
MGRFKGENRSQARWIMGGVSKGRGSGKSRKPRQAAFGQTGARVCPSSPRQDAVPRFRWPGDAECASSTHT
PTMSGCKLPMGLCPDMCPAAERARRERERRLHRLEVEPGGRGNAPRADPKRTVKEYSRPAAGKPRPPPSL
LRPPPVLLATVRYLAGEVAGRGDVSCAEVASFVADRLRAVRLDLSLQGVDDADAATVLEAALATLLAVVA
RVRPEETRGAADPVLLQTQVQEGFGSLRRCYARGKGPYPRQAAFQGLFLLYNLGSVEALQEVLQLPAALR
ACPPLQAALAVDAAFREDNHARLFRLLRTLPYLQSCAVQEHIGYARRKALARLSRALSTPKGQTLPLDFI
EHFLALDGLQEARDLCQAHGLTLDKDRVVFLRGQYSEEGLPPPGAYHILVGNKLQGHTLEDVVMAEEGDI
HRPGSAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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