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Report for CCDS37820.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37820.2 Public Mus musculus 18 Sncaip 23 108 98 CCDS HistoryNCBI Gene:67847Re-query CCDS DB by CCDS ID:37820.2Re-query CCDS DB by GeneID:67847See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 37820.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript data. The update changes the last splice junction and results in a CDS that is 1 aa longer at the 3' end.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37820.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163742.8 ENSMUSP00000127189.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163742.8Link to Ensembl Protein Viewer:ENSMUSP00000127189.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163742Re-query CCDS DB by Protein ID:ENSMUSP00000127189
Original member Current member EBI ENSMUST00000178011.7 ENSMUSP00000137549.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178011.7Link to Ensembl Protein Viewer:ENSMUSP00000137549.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178011Re-query CCDS DB by Protein ID:ENSMUSP00000137549
Original member NCBI NM_001199154.1 NP_001186083.1 Updated not alive Link to Nucleotide Sequence:NM_001199154.1Link to Protein Sequence:NP_001186083.1Re-query CCDS DB by Nucleotide ID:NM_001199154Re-query CCDS DB by Protein ID:NP_001186083
Current member NCBI NM_001199154.2 NP_001186083.1 Accepted alive Link to Nucleotide Sequence:NM_001199154.2Link to Protein Sequence:NP_001186083.1Re-query CCDS DB by Nucleotide ID:NM_001199154Re-query CCDS DB by Protein ID:NP_001186083Link to BLAST:NP_001186083.1
Original member NCBI NM_026408.4 NP_080684.3 Updated not alive Link to Nucleotide Sequence:NM_026408.4Link to Protein Sequence:NP_080684.3Re-query CCDS DB by Nucleotide ID:NM_026408Re-query CCDS DB by Protein ID:NP_080684
Current member NCBI NM_026408.5 NP_080684.3 Accepted alive Link to Nucleotide Sequence:NM_026408.5Link to Protein Sequence:NP_080684.3Re-query CCDS DB by Nucleotide ID:NM_026408Re-query CCDS DB by Protein ID:NP_080684Link to BLAST:NP_080684.3

Chromosomal Locations for CCDS 37820.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 52838010 52838066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52851439 52851511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52868539 52869407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52871302 52871481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52884968 52885081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52894834 52894959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52898120 52898289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52905805 52905897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52906418 52907477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52915307 52915312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2748 nt):
ATGGAAGCCCCTGAATACCTTGATTTGGATGAAATCGACTTTAGTGATGACATTTCTTATTCAGTCACCT
CTCTCAAGACCATCCCAGCACTGTGCAGAAGATGTGACTCACAAAACGAAGACAGATCAGTTTCTAGCTC
TGGCTGGAATTGTGGTGTCTCAACTCTCATTACAAACCCACAAAAGCCCACTGGAATCGCTGATGTATAC
AGTAAGTTCCGCCCAGTGAAGCGAGTTTCTCCACTGAAGCATCAGCCGGAGACTCTGGAGAACAACGAAA
ATGAGGACCAAAAGAACAATACGGTGGAATACCAGAAAGGGGGGGAGACTGACCAGGGCCCCCAGCCTGA
GGAGCTCAGCCCTGAAGATGGAGTCGGGGGGTTGCCAGGCAAAGGCTCAGAGCCCAGCCAAGCCCTGGGC
GAGCTGGAGCACTATGACCTCGACATGGATGAGATTCTCGATGTGCCTTACATTAAATCCAGTCAACAGC
TGGCCCCGCTCACGAAGGTGACTTCGGAGAAAAGGATTCTGGGTTTATGCACAACCATCAATGGCCTCTC
TGCCAAAACCTGCCCTATTGCAAGCACTGAGAACTCCACACCCAACATGACTCCATTTTGTGTTCTTTCT
CCTGTGAAAAGCCCTCACTTACGGAAAGCACCTACTGCCCTCCGGGACCAGCACAAGCTCTCTACAGAAG
ACTCCGAGAGCTCGCCAGCTCTGGGTAAATGTGGCCCTGCATATGAATCAGAAAACCACAGTAAAGACTT
CTTAAACAAGGTTTTTAGTGATCCCCATAGTCGGAAAATTGAGAAGTCTGGGCCAGACTGCAAGCTCAGG
TCCTTCCACCTGCAATCTTCAGCAGCAGGAGCCAAAACAGAGGAGCCGATCAATGGCATGAACTGGACCA
ACACCCAAGGCACGGAAGAAAGAACTGAGTACCTGAAGAAAGTAAGAAGCATACTGAACATTGTCAACGA
AGGACAGATATCGCTCTTGCCACACCTAGCTGCAGACAATCTGGACAAAATTCACGATGAGAACGGAAAC
AATCTGTTACACATTGCTGCATCAAAGGGCCATGCAGAATGCCTGCAGCACCTCACGTCACTGATGGGCG
AAGACTGTCTGAATGAACGGAACACAGAGCAGCTGACTCCAGCAGGCCTGGCCATCAAGAATGGTCAGCT
GGAGTGTGTTCGCTGGATGGTGAGTGAGACAGAAGCCATTGCGGAATTGAGTTGTTCCAAGGATTTCCCA
AGCCTTATTCATTACGCAGGTTGCTATGGGCAGGAAAAGATCCTTCTGTGGCTTCTTCAATTCATGCAAG
AACAAGGCATCTCATTGGATGAAGTGGACCGGGAAGGCAACAGTGCTGTTCATGTCGCCTCACAACATGG
CTACCTTGGATGCATACAGACCCTGGTGGAGTATGGAGCGAATGTCACAATGCAGAACCACGCTGGGGAA
AAGCCCTCCCAGAGTGCTGAGCGGCACGGCCACACCCTATGCTCCCGGTACCTCGTGGTGGTGGAGACCT
GCATGTCACTGGCCTCACAAGTGGTAAAGTTGACCAAGCAGCTAAAGGAGCAGACAGTGGAGCGTGTCAC
ACTGCAGAGTCAACTCCAACAACTTCTAGAAGCCCAGAAATCAGAGGGCAAGTCCCTGCCTTCTTCACCC
AGTTCACCCTCCTCACCAGCTTCTACAAAGTCCCAGTGGAAAGCTCTAGATACAGATGAGGAGTCTACAG
GCAAAAGCAAAGTGGGAGCCCAGGAGGGAATACAAGTTCTTGGAAGTTTGTCAGTCTCCAGCAGGGCTAG
GACCAAAGGAAAAGATGAAGACTCAGATAAAATCCTACGTCAGTTATTGGGGAAAGAAATATCAGAGAAT
GTCTGCACCCAGGAAAAGCTGTCACTGGAATTCCAGGATGCTCAGGCATCCTCTAGGAATTCGAAAAAAA
TCCCTCTAGAGAAGAGGGAACTGAAGCTAGCCAGACTGAGGCAGCTGATGCAGAGATCGTTGAGTGAATC
TGACACGGACTCAAACAACTCTGAAGATCCCAAAAATACTCCTGTGAAAAGAGCAGACAGGCCGAGGCCA
CAGCCCATTGTAGAAAGCGTGGAGAATGTAGACAGCGCAGAAAGCTTACACCTGATGATAAAGAAACACT
CTCTGGCATCAGGACGCAGGTTTCCTTTTGGTATGAAAGCCTCCAAATCCCTGGATGGACACAGCCCATC
TCCCACCTCAGAGAGCAGTGAACCAGACTTGGACTCCCATGGTCCAGGCCTGGGGATGACTCCTCCAACC
CAGCCTTCCACAGAAGCCACTCAGTCCAGTCCCGACAGTACCGCTGCCCAGAAAGTTGCCACAAGCCCCA
AGAGTGCCCTCAAGTCTCCATCATCCAAGCGCCGGACATCCCAAAACTCAAAACTCAGAGTGACCTTTGA
GGAACCTGTCGTACAAATGGAACAAACTGGCCTTGAACTAAATGGAGAAAAAGACAAAGATAAGGGCAGG
GCCCCCCAGAGGACTAGTGAATCCGGAGAACAAATGAAAAGGCCTTTCGGAACCTTCCGATCCATCATGG
AGAGTTTAAGTGGTAATCAGAACAACAATAATAACTACCAGCCAGCCAGCCAGCTGAAGACCTGCACACT
ACCCTTGACATCCCTTGGAAGGAAGACAGCAGATGCCAAGGGAAATCCTGTGAGCCCGGCGAGCAAAGGA
AAGAATAAGGCAGCATAA

Translation (915 aa):
MEAPEYLDLDEIDFSDDISYSVTSLKTIPALCRRCDSQNEDRSVSSSGWNCGVSTLITNPQKPTGIADVY
SKFRPVKRVSPLKHQPETLENNENEDQKNNTVEYQKGGETDQGPQPEELSPEDGVGGLPGKGSEPSQALG
ELEHYDLDMDEILDVPYIKSSQQLAPLTKVTSEKRILGLCTTINGLSAKTCPIASTENSTPNMTPFCVLS
PVKSPHLRKAPTALRDQHKLSTEDSESSPALGKCGPAYESENHSKDFLNKVFSDPHSRKIEKSGPDCKLR
SFHLQSSAAGAKTEEPINGMNWTNTQGTEERTEYLKKVRSILNIVNEGQISLLPHLAADNLDKIHDENGN
NLLHIAASKGHAECLQHLTSLMGEDCLNERNTEQLTPAGLAIKNGQLECVRWMVSETEAIAELSCSKDFP
SLIHYAGCYGQEKILLWLLQFMQEQGISLDEVDREGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGE
KPSQSAERHGHTLCSRYLVVVETCMSLASQVVKLTKQLKEQTVERVTLQSQLQQLLEAQKSEGKSLPSSP
SSPSSPASTKSQWKALDTDEESTGKSKVGAQEGIQVLGSLSVSSRARTKGKDEDSDKILRQLLGKEISEN
VCTQEKLSLEFQDAQASSRNSKKIPLEKRELKLARLRQLMQRSLSESDTDSNNSEDPKNTPVKRADRPRP
QPIVESVENVDSAESLHLMIKKHSLASGRRFPFGMKASKSLDGHSPSPTSESSEPDLDSHGPGLGMTPPT
QPSTEATQSSPDSTAAQKVATSPKSALKSPSSKRRTSQNSKLRVTFEEPVVQMEQTGLELNGEKDKDKGR
APQRTSESGEQMKRPFGTFRSIMESLSGNQNNNNNYQPASQLKTCTLPLTSLGRKTADAKGNPVSPASKG
KNKAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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