NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37785.1 Public Mus musculus 18 Hdac3 23 108 98 CCDS HistoryNCBI Gene:15183Re-query CCDS DB by CCDS ID:37785.1Re-query CCDS DB by GeneID:15183See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043498.8 ENSMUSP00000037981.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043498.8Link to Ensembl Protein Viewer:ENSMUSP00000037981.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043498Re-query CCDS DB by Protein ID:ENSMUSP00000037981
Original member Current member NCBI NM_010411.2 NP_034541.2 Accepted alive Link to Nucleotide Sequence:NM_010411.2Link to Protein Sequence:NP_034541.2Re-query CCDS DB by Nucleotide ID:NM_010411Re-query CCDS DB by Protein ID:NP_034541Link to BLAST:NP_034541.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034541.2 428 O88895-1 428 100% 0 0

Chromosomal Locations for CCDS 37785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37937614 37937683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37940953 37941110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37941379 37941458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37941708 37941766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37941878 37941967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37943456 37943520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37943678 37943751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37944129 37944209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37944892 37945025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37945340 37945395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37945511 37945567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37945694 37945775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37952471 37952613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37954682 37954764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37954859 37954913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGGCCAAGACCGTGGCGTATTTCTACGACCCCGATGTGGGCAACTTCCACTATGGAGCTGGACACCCAA
TGAAACCTCATCGCCTGGCATTGACTCATAGCCTAGTCCTGCATTATGGTCTCTATAAGAAGATGATCGT
CTTCAAGCCTTACCAGGCCTCCCAGCATGACATGTGCCGCTTCCATTCTGAGGACTACATCGACTTCCTG
CAGAGAGTCAGCCCCACCAATATGCAGGGTTTCACCAAGAGCCTTAATGCCTTCAACGTGGGTGATGACT
GCCCAGTGTTTCCAGGACTTTTCGAGTTCTGCTCCCGTTACACAGGCGCATCTCTGCAAGGAGCAACACA
GCTAAACAACAAGATCTGTGATATTGCCATCAACTGGGCCGGTGGTCTACATCATGCCAAGAAATTTGAG
GCCTCTGGCTTCTGCTATGTCAATGACATAGTAATTGGTATCCTGGAGCTGCTTAAGTACCACCCTCGGG
TGCTCTACATTGATATCGACATCCACCATGGTGACGGGGTTCAGGAAGCCTTCTACCTCACTGACCGGGT
CATGACTGTGTCCTTCCACAAATACGGAAATTACTTCTTTCCTGGAACAGGTGACATGTATGAAGTTGGA
GCAGAGAGTGGCCGCTACTATTGTCTCAATGTGCCCTTACGAGATGGCATTGATGACCAGAGTTACAAGC
ACCTTTTCCAGCCAGTCATCAGCCAGGTGGTGGACTTCTACCAGCCGACGTGCATCGTGCTCCAGTGTGG
CGCTGACTCCCTGGGCTGTGATCGATTAGGCTGCTTCAATCTCAGCATTCGAGGACATGGGGAATGTGTT
GAATATGTCAAGAGTTTCAATATCCCTCTCCTGGTACTGGGAGGTGGTGGCTACACTGTCCGAAATGTTG
CCCGGTGTTGGACATATGAAACATCTCTGCTGGTAGAAGAGGCCATTAGTGAGGAACTTCCCTATAGTGA
ATACTTCGAGTACTTTGCCCCAGATTTCACACTCCATCCAGATGTCAGCACCCGCATCGAGAATCAGAAC
TCACGCCAGTATCTGGACCAGATCCGCCAGACAATCTTTGAAAACTTGAAGATGCTGAACCATGCACCCA
GTGTCCAGATTCATGATGTCCCGGCAGACCTCCTGACGTATGACAGGACTGACGAGGCCGACGCTGAAGA
GAGAGGTCCCGAGGAGAACTACAGCAGGCCAGAAGCACCCAATGAGTTCTATGATGGCGACCATGACAAC
GACAAGGAAAGTGATGTGGAGATTTAG

Translation (428 aa):
MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFL
QRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFE
ASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVG
AESGRYYCLNVPLRDGIDDQSYKHLFQPVISQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECV
EYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQN
SRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDN
DKESDVEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH