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Report for CCDS37677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37677.1 Public Mus musculus 17 Vapa 23 108 98 CCDS HistoryNCBI Gene:30960Re-query CCDS DB by CCDS ID:37677.1Re-query CCDS DB by GeneID:30960See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024897.9 ENSMUSP00000024897.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024897.9Link to Ensembl Protein Viewer:ENSMUSP00000024897.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024897Re-query CCDS DB by Protein ID:ENSMUSP00000024897
Original member Current member NCBI NM_013933.3 NP_038961.2 Accepted alive Link to Nucleotide Sequence:NM_013933.3Link to Protein Sequence:NP_038961.2Re-query CCDS DB by Nucleotide ID:NM_013933Re-query CCDS DB by Protein ID:NP_038961Link to BLAST:NP_038961.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038961.2 249 Q9WV55 249 100% 0 0

Chromosomal Locations for CCDS 37677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 65580689 65580847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65582580 65582753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65592291 65592371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65593440 65593543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65594902 65595054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65613220 65613298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGCGTCCGCCTCCGGGGCCATGGCGAAGCACGAGCAGATCCTGGTCCTCGACCCTCCTTCAGACCTCA
AATTCAAAGGCCCCTTCACAGATGTAGTCACTACAAATCTTAAATTGCAAAATCCATCGGATAGAAAAGT
GTGTTTCAAAGTGAAGACTACAGCACCTCGCCGGTACTGTGTGCGGCCCAACAGTGGGATTATTGACCCG
GGGTCAATTGTGACTGTTTCAGTAATGCTGCAACCCTTTGATTATGATCCGAATGAAAAGAGTAAACATA
AGTTCATGGTACAGACAATTTTTGCTCCACCAAACATTTCAGATATGGAAGCTGTGTGGAAAGAAGCAAA
ACCTGATGAATTAATGGATTCTAAATTGAGATGTGTGTTTGAAATGCCGAATGAAAATGATAAGCTGAAT
GATATGGAACCTAGCAAAGCTGTTCCACTGAATGCATCCAAACAAGACGGACCCCTGCCAAAACCACACA
GTGTTTCACTCAATGATACGGAAACAAGGAAACTGATGGAAGAGTGCAAGCGACTCCAGGGAGAAATGAT
GAAGCTCTCAGAAGAAAACCGACACCTGAGAGATGAAGGCCTAAGGCTCAGAAAGGTAGCACATTCGGAT
AAACCTGGATCCACCTCAGCCGTGTCCTTCAGAGATAATGTCACCAGTCCTCTTCCTTCTCTTCTGGTTG
TAATTGCAGCCATTTTCATTGGATTCTTTCTAGGGAAATTCATCTTGTAG

Translation (249 aa):
MASASGAMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDP
GSIVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNENDKLN
DMEPSKAVPLNASKQDGPLPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRHLRDEGLRLRKVAHSD
KPGSTSAVSFRDNVTSPLPSLLVVIAAIFIGFFLGKFIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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