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Report for CCDS3764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3764.1 Public Homo sapiens 4 OTUD4 24 110 108 CCDS HistoryNCBI Gene:54726Re-query CCDS DB by CCDS ID:3764.1Re-query CCDS DB by GeneID:54726See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3764.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509620.6 ENSP00000424192.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509620.6Link to Ensembl Protein Viewer:ENSP00000424192.2Re-query CCDS DB by Nucleotide ID:ENST00000509620Re-query CCDS DB by Protein ID:ENSP00000424192
Original member Current member NCBI NM_017493.7 NP_059963.1 Accepted alive Link to Nucleotide Sequence:NM_017493.7Link to Protein Sequence:NP_059963.1Re-query CCDS DB by Nucleotide ID:NM_017493Re-query CCDS DB by Protein ID:NP_059963Link to BLAST:NP_059963.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059963.1 145 Q01804-4 145 100% 0 0

Chromosomal Locations for CCDS 3764.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 145159499 145159635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145162640 145162721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145164154 145164226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145165151 145165197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145171670 145171720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145174661 145174708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGGCCTGTATTCACTATCTTCGAGAGAACAGAGAGAAATTTGAAGCGTTTATAGAAGGATCATTTGAAG
AATATTTAAAGCGTTTGGAAAATCCACAGGAATGGGTAGGACAAGTGGAAATAAGTGCCCTTTCTCTTAT
GTACAGGAAAGATTTTATAATTTATCGGGAACCAAATGTTTCTCCTTCACAAGTAACAGAAAATAATTTT
CCTGAAAAGGTGTTACTGTGTTTTTCAAATGGAAATCATTATGATATTGTGTATCCCATAAAGTATAAAG
AAAGCTCTGCTATGTGTCAGTCTCTCCTTTATGAATTGCTGTATGAGAAGGTATTTAAAACTGATGTTAG
TAAAATTGTGATGGAACTAGACACGTTGGAAGTAGCTGATGAAGATAACAGTGAAATATCAGATTCAGAG
GATGACAGTTGCAAGTAA

Translation (145 aa):
MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNF
PEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVADEDNSEISDSE
DDSCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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