NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37637.1 Public Mus musculus 17 Ptk7 23 108 98 CCDS HistoryNCBI Gene:71461Re-query CCDS DB by CCDS ID:37637.1Re-query CCDS DB by GeneID:71461See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044442.9 ENSMUSP00000043703.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044442.9Link to Ensembl Protein Viewer:ENSMUSP00000043703.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000044442Re-query CCDS DB by Protein ID:ENSMUSP00000043703
Original member Current member NCBI NM_175168.4 NP_780377.1 Accepted alive Link to Nucleotide Sequence:NM_175168.4Link to Protein Sequence:NP_780377.1Re-query CCDS DB by Nucleotide ID:NM_175168Re-query CCDS DB by Protein ID:NP_780377Link to BLAST:NP_780377.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780377.1 1062 Q8BKG3 1062 100% 0 0

Chromosomal Locations for CCDS 37637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46565335 46565495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46566103 46566281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46567925 46568076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46571603 46571683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46572522 46572754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46573420 46573575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46574272 46574475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46576264 46576391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46576492 46576642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46576761 46576910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46579050 46579169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46579293 46579428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46579567 46579700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46586201 46586467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46586714 46586862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46590012 46590162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46590261 46590451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46590759 46590861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46591515 46591802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46629268 46629322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3189 nt):
ATGGGAGCCCGCCCGCTGACTCTGCTCAGAGCCCTGCTTCTGCCGCTGCTGGCCGGTGCCCAAGCCGCTA
TCGTCTTTATCAAGGAGCCGTCCTCCCAGGATGCACTTCAAGGGCGCCGGGCGCTGCTCCGTTGTGAAGT
GGAGGCTCCGGACCCGGTGCACGTGTACTGGCTGCTCAATGGGGTGCCTGTCCAGGACACGGAGCGACGG
TTTGCCCAGGGCAGCAGCCTGAGTTTCGCAGCTGTGGACCGGCTCCAGGATTCTGGTGCTTTCCAGTGTG
TGGCTCGGGATAACGTCACTGGAGAGGAAGTCCGCAGTACTAATGCCTCCTTCAACATCAAATGGATCGA
AGCAGGTCCTGTGGTCCTGAAGCACCCAGCCTCAGAAGCTGAGATCCAGCCCCAGACCCAGGTCACACTG
CGATGTCACATTGACGGGCACCCTCGGCCTACCTACCAGTGGTTCCGAGATGGGACCCCCCTCTCTGATG
ATCAGAGCACCCACACCGTCAGCAGCAGGGAGAGGAACCTGACCCTACGGCCAGCCAGTCCCGAACATAG
TGGCCTCTACTCCTGCTGTGCCCACAATGCCTTTGGCCAGGCCTGCAGCAGCCAGAACTTCACCTTGAGT
GTTGCAGATGAAAGCTTTGCCAGGGTGGTGCTGGCACCTCAGGATGTTGTTGTAGCAAGGAACGAGGAGG
CCATGTTCCATTGCCAGTTTTCAGCCCAGCCACCCCCGAGCCTGCAGTGGGTCTTTGAGGACGAGACTCC
CATCACTAACCGAAGCCGTCCCCCTCACCTCCGCAGAGCTGTGGTGTTTGCCAATGGCTCTCTGCTGCTG
ACCCAAGTCCGGCCACGGAATGCAGGCGTCTACCGTTGCATCGGTCAGGGACAGAGGGGCCCACCCATTG
TCCTGGAAGCCACTCTCCACCTGGCAGAGATTGAAGACATGCTGCCGTTTGAACCACGGGTGTTCATAGC
TGGTGATGAGGAACGAGTCACCTGCCCAGCCCCCCAGGGCCTGCCTACACCCAGTGTCTGGTGGGAGCAT
GCTGGAGTCCCTCTTCCTGCCCATGGCAGGGTCCACCAGAAGGGCCTTGAGCTTGTGTTTGTCACCATCG
CTGAGAGTGATACTGGTGTCTACACCTGCCATGCAAGCAACCTGGCTGGTCAGCGGCGACAGGATGTCAA
TATCACAGTGGCCACTGTACCCACATGGCTTAGGAAGCCCCAAGACAGCCAGCTGGAAGAGGGCAAGCCT
GGCTACTTGCACTGTCTGACACAGGCCACACCCAAGCCCACTGTGATCTGGTACAGGAACCAGATGCTGA
TCTCAGAGGACTCGAGGTTCGAAGTTTCGAAGAATGGGACCTTGCGCATCAATAGTGTGGAGGTGTATGA
CGGGACATTGTACCGTTGCGTGAGCAGTACCCCAGCCGGCAGCATCGAGGCCCAGGCCCGAGTCCAGGTG
CTGGAAAAACTCAAGTTCACGCCACCACCGCAGCCACAGCAGTGCATGGAGTTTGATAAGGAGGCTACGG
TGCCCTGCTCAGCCACTGGCCGGGAGAAGCCCACGGTTAAGTGGGTACGGGCAGATGGAAGTAGCCTCCC
TGAATGGGTGACAGACAATGCTGGAACCCTACACTTTGCCCGAGTGACCCGAGATGATGCTGGCAACTAC
ACTTGCATTGCATCCAACGAGCCACAGGGCCAGATCCGCGCTCATGTCCAGCTGACGGTGGCAGTTTTCA
TCACCTTCAAAGTGGAACCTGAGCGTACAACTGTGTACCAGGGCCACACAGCGCTGCTGCGGTGTGAGGC
TCAGGGCGACCCCAAGCCTCTCATTCAGTGGAAAGGCAAAGACCGGATCCTGGACCCTACCAAGCTGGGA
CCCAGGATGCACATCTTCCAGAACGGTTCCCTGGTGATCCATGACGTGGCCCCTGAGGACTCAGGCTCCT
ACACCTGCATCGCTGGCAACAGCTGTAACATCAGGCACACAGAGGCCCCGCTCTTAGTCGTGGACAAGCC
AGTGATGGAAGACTCGGAGGGCCCAGGCAGCCCTCCCCCATACAAGATGATCCAGACCATCGGGCTGTCG
GTGGGCGCAGCGGTAGCCTACATCATCGCGGTCCTGGGCCTCATGTTCTACTGCAAGAAGCGGTGTAAAG
CCAAGCGGCTGCAGAAACAGCCTGAGGGGGAGGAGCCAGAGATGGAGTGCCTCAATGGTGGGCCTTTGCA
GAATGGTCAGCCATCAGCCGAGATCCAGGAAGAAGTGGCGTTGACCAGCTTGGGCTCTGGCCCCCCAGCC
ACCAACAAGCGCCACAGCGCCGGTGATAGGATGCATTTCCCGAGAGCCAGCCTGCAGCCTATCACCACTC
TGGGGAAAAGCGAGTTCGGGGAGGTGTTCCTGGCAAAGGCGCAGGGCGTAGAGGAAGGCGCGACGGAGAC
CCTGGTCCTCGTGAAGAGCCTGCAGAGCAGGGACGAGCAACAACAGCTGGACTTCCGGAGAGAGGTGGAG
ATGTTCGGGAAGTTGAACCATGCCAACGTGGTGCGGCTTCTGGGGCTGTGCCGGGAGGCTGAGCCCCACT
ACATGGTGCTGGAGTATGTGGACCTGGGAGATCTCAAACAGTTCCTGAGGATTTCCAAGAACAAGGATGA
AAAGTTGAAGTCACAGCCCCTCAGCACCAAACAGAAGGTGGCCCTGTGTTCCCAGGTGGCCCTGGGCATG
GAGCACCTGTCCAACAACCGCTTTGTGCACAAGGACTTAGCGGCTCGCAACTGCCTGATCAGTGCCCAGA
GGCAGGTGAAGGTGTCCGCACTGGGCCTGAGCAAGGATGTATACAACAGTGAGTACTACCACTTCCGCCA
GGCCTGGGTACCTCTGCGTTGGATGTCTCCAGAGGCTGTCCTGGAGGGTGACTTCTCCACTAAGTCTGAT
GTCTGGGCCTTTGGTGTGCTCATGTGGGAAGTGTTCACTCATGGAGAGATGCCCCATGGTGGACAGGCAG
ATGATGAGGTGCTGGCAGACTTGCAGGCTGGCAAGGCTCGACTCCCGCAGCCCGAAGGCTGCCCGTCTAA
GCTCTACCGGCTGATGCAGCGCTGCTGGGCCCCGAACCCCAAGGACCGGCCCTCCTTCAGTGAGATCGCC
AGCACCCTGGGAGACAGCCCTGCAGACAGCAAGCAGTGA

Translation (1062 aa):
MGARPLTLLRALLLPLLAGAQAAIVFIKEPSSQDALQGRRALLRCEVEAPDPVHVYWLLNGVPVQDTERR
FAQGSSLSFAAVDRLQDSGAFQCVARDNVTGEEVRSTNASFNIKWIEAGPVVLKHPASEAEIQPQTQVTL
RCHIDGHPRPTYQWFRDGTPLSDDQSTHTVSSRERNLTLRPASPEHSGLYSCCAHNAFGQACSSQNFTLS
VADESFARVVLAPQDVVVARNEEAMFHCQFSAQPPPSLQWVFEDETPITNRSRPPHLRRAVVFANGSLLL
TQVRPRNAGVYRCIGQGQRGPPIVLEATLHLAEIEDMLPFEPRVFIAGDEERVTCPAPQGLPTPSVWWEH
AGVPLPAHGRVHQKGLELVFVTIAESDTGVYTCHASNLAGQRRQDVNITVATVPTWLRKPQDSQLEEGKP
GYLHCLTQATPKPTVIWYRNQMLISEDSRFEVSKNGTLRINSVEVYDGTLYRCVSSTPAGSIEAQARVQV
LEKLKFTPPPQPQQCMEFDKEATVPCSATGREKPTVKWVRADGSSLPEWVTDNAGTLHFARVTRDDAGNY
TCIASNEPQGQIRAHVQLTVAVFITFKVEPERTTVYQGHTALLRCEAQGDPKPLIQWKGKDRILDPTKLG
PRMHIFQNGSLVIHDVAPEDSGSYTCIAGNSCNIRHTEAPLLVVDKPVMEDSEGPGSPPPYKMIQTIGLS
VGAAVAYIIAVLGLMFYCKKRCKAKRLQKQPEGEEPEMECLNGGPLQNGQPSAEIQEEVALTSLGSGPPA
TNKRHSAGDRMHFPRASLQPITTLGKSEFGEVFLAKAQGVEEGATETLVLVKSLQSRDEQQQLDFRREVE
MFGKLNHANVVRLLGLCREAEPHYMVLEYVDLGDLKQFLRISKNKDEKLKSQPLSTKQKVALCSQVALGM
EHLSNNRFVHKDLAARNCLISAQRQVKVSALGLSKDVYNSEYYHFRQAWVPLRWMSPEAVLEGDFSTKSD
VWAFGVLMWEVFTHGEMPHGGQADDEVLADLQAGKARLPQPEGCPSKLYRLMQRCWAPNPKDRPSFSEIA
STLGDSPADSKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH