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Report for CCDS37613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37613.1 Public Mus musculus 17 Trim26 23 108 98 CCDS HistoryNCBI Gene:22670Re-query CCDS DB by CCDS ID:37613.1Re-query CCDS DB by GeneID:22670See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053434.14 ENSMUSP00000060103.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053434.14Link to Ensembl Protein Viewer:ENSMUSP00000060103.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053434Re-query CCDS DB by Protein ID:ENSMUSP00000060103
Original member Current member EBI ENSMUST00000130367.7 ENSMUSP00000114896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130367.7Link to Ensembl Protein Viewer:ENSMUSP00000114896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130367Re-query CCDS DB by Protein ID:ENSMUSP00000114896
Original member Current member NCBI NM_001025599.3 NP_001020770.2 Accepted alive Link to Nucleotide Sequence:NM_001025599.3Link to Protein Sequence:NP_001020770.2Re-query CCDS DB by Nucleotide ID:NM_001025599Re-query CCDS DB by Protein ID:NP_001020770Link to BLAST:NP_001020770.2
Original member Current member NCBI NM_001286726.1 NP_001273655.1 Accepted alive Link to Nucleotide Sequence:NM_001286726.1Link to Protein Sequence:NP_001273655.1Re-query CCDS DB by Nucleotide ID:NM_001286726Re-query CCDS DB by Protein ID:NP_001273655Link to BLAST:NP_001273655.1
Original member Current member NCBI NM_001286727.1 NP_001273656.1 Accepted alive Link to Nucleotide Sequence:NM_001286727.1Link to Protein Sequence:NP_001273656.1Re-query CCDS DB by Nucleotide ID:NM_001286727Re-query CCDS DB by Protein ID:NP_001273656Link to BLAST:NP_001273656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020770.2 545 Q99PN3-1 545 100% 0 0
NP_001273655.1 545 Q99PN3-1 545 100% 0 0
NP_001273656.1 545 Q99PN3-1 545 100% 0 0

Chromosomal Locations for CCDS 37613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36850691 36851128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36851227 36851322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36852463 36852693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36854284 36854301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36856202 36856224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36856656 36856771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36856989 36857021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36857400 36858082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGCAGTGTCAGCCCCCTTGAGGAGCCTGGAGGAAGAGGTGACCTGCTCCATCTGCCTGGATTACCTGA
GGGACCCGGTGACCATCGACTGTGGCCATGTCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCATATC
GGGGAACCGGCCTGTCTGCCCGCTCTGCAAGAAGCCCTTTAAGAAGGAGAACATCCGACCCGTGTGGCAG
CTAGCAAGTCTGGTGGAGAACATTGAACGGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGCTCGCCC
GCGAGCCACAGGACATGAAGTTGTGTGAGCGGCACCAGGAGAAGCTACACTACTACTGTGAAGATGATGG
CAAACTGTTGTGTGTGATGTGCAGGGAGTCCCGGGAGCACCGCCCCCACACTGCAGTCCTGGTGGAGAAA
GCCGCCCTGCCTCACAGAGAGAAAATTCTGAACCACTTGAACACCCTAAGGAGAGACAGAGACAAAATCC
AGGGCTTTCAAGCCAAGGGAGAAGCTGATATTCTGGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTA
CATTGTGGCGGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCGGGAGCAGCACCTGCTAGACCAGCTG
GCCACCTTGGAGCAGCTCCTCACCGAGGGCAGGGAGAAGTTCAAGACCCGGGGCGTCAGTGAGCTTGACC
GGTTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGATGT
CTGCACTACACAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCC
ATCCCTCACATGGTTAAAAGAAAGGCAGGAGAATTCTCAGATAAACTTCTTTCTCTGCAGCGAGGCCTGA
GGCAGTTCCAGGGCAAGCTGCTGAGAGACTTGGAGTATAAGACAGTAAGCGTCACCCTGGACCCACAGTC
GGCCAGTGGATACCTACATCTTTCAGAGGACTGGAAGTGTGTGACCTATACTGGCCAATACCAGAGTGAC
TGTCTGCTCCCCCAGCAGTTTGACTGTGAGCCAGGAGTGTTGGGCAGCAAGGGCTTCACATGGGGAAAGG
TATACTGGGAAGTAGAGTTGGAGAGAGAAGGCTGGTCAGAGGATGAAGAAGAGGGGGAGGAGGAAGAAGA
AGGGGAAGAAGAGGAAGAAGACGAGGAGGTTGGCTATGGGGACGGATACGAAGACTGGGAAACAGATGAA
GAAGACGAATCACTGGGGGAAGAGGAAGAGGAGGAAGAGGAAGAAGAAGAAGAAGTTCAGGAAAGCTGCA
TGGTGGGAGTGGCCAAAGACTCTGTGAAGAGGAAAGGGGACCTCTCCCTGCGACCAGAAGATGGTGTGTG
GGCCCTTCGGCTCTCCCCCTCAGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTG
CGGCCCCGGAGAGTGGGCATCGCCCTGGATTATGAAGGTGGCACTGTGACATTCACCAATGCAGAGTCCC
AGGAACTCATCTATACCTTCACGACCACCTTCACCCGGCGCCTGGTTCCCTTCCTGTGGCTCAAGTGGCC
AGGAGCACGCCTTCTGCTGAGACCCTGA

Translation (545 aa):
MAVSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVWQ
LASLVENIERLKVDNGRQPGELAREPQDMKLCERHQEKLHYYCEDDGKLLCVMCRESREHRPHTAVLVEK
AALPHREKILNHLNTLRRDRDKIQGFQAKGEADILAALTKLQEQRQYIVAEFKQGHQFLKKREQHLLDQL
ATLEQLLTEGREKFKTRGVSELDRLTLVISELEGKARQPAAELMQDVCTTQDTKDFANKYPRKKFWIGKA
IPHMVKRKAGEFSDKLLSLQRGLRQFQGKLLRDLEYKTVSVTLDPQSASGYLHLSEDWKCVTYTGQYQSD
CLLPQQFDCEPGVLGSKGFTWGKVYWEVELEREGWSEDEEEGEEEEEGEEEEEDEEVGYGDGYEDWETDE
EDESLGEEEEEEEEEEEEVQESCMVGVAKDSVKRKGDLSLRPEDGVWALRLSPSGIWANTSPEAQLFPVL
RPRRVGIALDYEGGTVTFTNAESQELIYTFTTTFTRRLVPFLWLKWPGARLLLRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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