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Report for CCDS376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
376.1 Public Homo sapiens 1 TRIM62 24 110 108 CCDS HistoryNCBI Gene:55223Re-query CCDS DB by CCDS ID:376.1Re-query CCDS DB by GeneID:55223See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 376.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291416.10 ENSP00000291416.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291416.10Link to Ensembl Protein Viewer:ENSP00000291416.5Re-query CCDS DB by Nucleotide ID:ENST00000291416Re-query CCDS DB by Protein ID:ENSP00000291416
Original member Current member NCBI NM_018207.3 NP_060677.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018207.3Link to Protein Sequence:NP_060677.2Re-query CCDS DB by Nucleotide ID:NM_018207Re-query CCDS DB by Protein ID:NP_060677Link to BLAST:NP_060677.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060677.2 475 Q9BVG3-1 475 100% 0 0

Chromosomal Locations for CCDS 376.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 33147177 33147727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33158253 33158368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33159688 33159944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33165471 33165566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33181025 33181432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCGTGCAGCCTCAAGGACGAGCTGCTGTGCTCCATCTGCCTGAGCATCTACCAGGACCCGGTGAGCC
TGGGCTGCGAGCATTACTTCTGCCGCCGCTGCATCACGGAGCACTGGGTGCGGCAGGAGGCGCAGGGCGC
CCGCGACTGCCCCGAGTGCCGGCGCACGTTCGCCGAGCCCGCGCTGGCGCCCAGCCTCAAGCTGGCCAAC
ATCGTGGAGCGCTACAGCTCCTTCCCGCTGGACGCCATCCTCAACGCGCGCCGCGCCGCGCGACCCTGCC
AGGCGCACGACAAGGTCAAGCTCTTCTGCCTCACGGACCGCGCGCTTCTCTGCTTCTTCTGCGACGAGCC
TGCACTGCACGAGCAGCATCAGGTCACCGGCATCGACGACGCCTTCGACGAGCTGCAGAGGGAGCTGAAG
GACCAACTTCAGGCCCTTCAAGACAGCGAGCGGGAACACACCGAAGCGCTGCAGCTGCTCAAGCGACAAC
TGGCGGAGACCAAGTCTTCCACCAAGAGCCTGCGGACCACTATCGGCGAGGCCTTCGAGCGGCTGCACCG
GCTGCTGCGTGAACGCCAGAAGGCCATGCTAGAGGAGCTGGAGGCGGACACGGCCCGCACGCTGACCGAC
ATCGAGCAGAAAGTCCAGCGCTACAGCCAGCAGCTGCGCAAGGTCCAGGAGGGAGCCCAGATCCTGCAGG
AGCGGCTGGCTGAAACCGACCGGCACACCTTCCTGGCTGGGGTGGCCTCACTGTCCGAGCGGCTCAAGGG
AAAAATCCATGAGACCAACCTCACATATGAAGACTTCCCGACCTCCAAGTACACAGGCCCCCTGCAGTAC
ACCATCTGGAAGTCCCTGTTCCAGGACATCCACCCAGTGCCAGCCGCCCTAACCCTGGACCCGGGCACAG
CCCACCAGCGCCTGATCCTGTCGGACGACTGCACCATTGTGGCTTACGGCAACTTGCACCCACAGCCACT
GCAGGACTCGCCAAAGCGCTTCGATGTGGAGGTGTCGGTGCTGGGTTCTGAAGCCTTCAGTAGTGGCGTC
CACTACTGGGAGGTGGTGGTGGCGGAGAAGACCCAGTGGGTGATCGGGCTGGCACACGAAGCCGCAAGCC
GCAAGGGCAGCATCCAGATCCAGCCCAGCCGCGGCTTCTACTGCATCGTGATGCACGATGGCAACCAGTA
CAGCGCCTGCACGGAGCCCTGGACGCGGCTTAACGTCCGGGACAAGCTTGACAAGGTGGGTGTCTTCCTG
GACTATGACCAAGGCTTGCTCATCTTCTACAATGCTGATGACATGTCCTGGCTCTACACCTTCCGCGAGA
AGTTCCCTGGCAAGCTCTGCTCTTACTTCAGCCCTGGCCAGAGCCACGCCAATGGCAAGAACGTTCAGCC
GCTGCGGATCAACACCGTCCGCATCTAG

Translation (475 aa):
MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSLKLAN
IVERYSSFPLDAILNARRAARPCQAHDKVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFDELQRELK
DQLQALQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTD
IEQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHETNLTYEDFPTSKYTGPLQY
TIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGV
HYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGVFL
DYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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