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Report for CCDS37344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37344.1 Under review, update Mus musculus 16 Qtrt2 23 108 98 CCDS HistoryNCBI Gene:106248Re-query CCDS DB by CCDS ID:37344.1Re-query CCDS DB by GeneID:106248See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 37344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023387.13 ENSMUSP00000023387.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023387.13Link to Ensembl Protein Viewer:ENSMUSP00000023387.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023387Re-query CCDS DB by Protein ID:ENSMUSP00000023387
Original member NCBI NM_029128.2 NP_083404.2 Updated not alive Link to Nucleotide Sequence:NM_029128.2Link to Protein Sequence:NP_083404.2Re-query CCDS DB by Nucleotide ID:NM_029128Re-query CCDS DB by Protein ID:NP_083404
NCBI NM_029128.3 NP_083404.2 Updated not alive Link to Nucleotide Sequence:NM_029128.3Link to Protein Sequence:NP_083404.2Re-query CCDS DB by Nucleotide ID:NM_029128Re-query CCDS DB by Protein ID:NP_083404
NCBI NM_029128.4 NP_083404.3 Updated not alive Link to Nucleotide Sequence:NM_029128.4Link to Protein Sequence:NP_083404.3Re-query CCDS DB by Nucleotide ID:NM_029128Re-query CCDS DB by Protein ID:NP_083404
Current member NCBI NM_029128.5 NP_083404.3 Pending alive Link to Nucleotide Sequence:NM_029128.5Link to Protein Sequence:NP_083404.3Re-query CCDS DB by Nucleotide ID:NM_029128Re-query CCDS DB by Protein ID:NP_083404Link to BLAST:NP_083404.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083404.3 344 B8ZXI1-2 344 100% 0 0

Chromosomal Locations for CCDS 37344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 43863070 43863301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43867410 43867527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43868946 43869097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43871621 43871820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43877957 43878033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43880299 43880354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43880993 43881195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGATGAAGCTGAGTCTCATCAAAGTCGTTAATGGCTGTCGTCTAGGAAAAATACAAAACCTGGGCAAAG
CAGGGGACTGCACGGTGGACATTCCGGGCTGTCTTCTCTACACCAGGACTGGCTCTGCCCCACACCTGAC
ACATCAGACGCTGCGTAACATCCACGGGGTCCCAGGCATAGCCCAGCTCACACTCTCATCCCTAGCAGAA
CATCATGAAGTCTTGGCAGAATATAAGAAAGGAGTTGGAAGCTTTATAGGCATGCCGGAATCACTCTTCT
ATTGTTCCCTGCACGATCCAGTCACCCCCGGCCCAGCTGGTTATGTAACAAGTAAGGTCCTCCAGAAAAG
TGTGATCATTGGAGTGATTGAGGGTGGAGATGTGATGGAAGAGAGGTTGAGGTCAGCACGAGAGACAGCC
AAGCGACCCGTCGGGGGCTTCCTGCTGGACGGCTTTCAAGGGGATCCAGCAGTCACAGAAACCAGACTGC
ACTTGCTGTCATCAGTCACTGCAGAGCTGCCAGAGGACAAACCAAGGCTCATCTGCGGTGTCAGCCGGCC
AGACGAAGTGCTAGAGTGCATCGAAAGGGGAGTGGACTTGTTTGAGAGTTTTTTCCCATATCAAGTGACC
GAGCGGGGCTGTGCCCTGACTTTCACCTTTGATTGCCAGCTGAATCCTGAGGAGACACTATTGCAACAAA
ATGGAATCCAAGAAAAAATAAAAGGCTTGGATCAAGCAAAGAAAATTGAAGCAACTGGTTGCAACCAAGA
GATGACGTCATTTGAAATTAATCTGAAGGAGAAAAAGTACCAGGAAGACTTTGACCCGCTTGTAAGAGGG
TGCTCCTGTTACTGCTGTAAGAACCACACTCGTGCGTATATCCACCATCTTCTGATGACCAACGAGCTGC
TGGCTGGTGTCCTCCTTATGATGCACAACTTTGAGCACTACTTTGGATTTTTCTGCTCCATCCGAGAAGC
ACTAAAGAATGACACACTGGCACAGCTGAAAGAACTCATTTGCAGACAGATGTTTTGA

Translation (345 aa):
MMKLSLIKVVNGCRLGKIQNLGKAGDCTVDIPGCLLYTRTGSAPHLTHQTLRNIHGVPGIAQLTLSSLAE
HHEVLAEYKKGVGSFIGMPESLFYCSLHDPVTPGPAGYVTSKVLQKSVIIGVIEGGDVMEERLRSARETA
KRPVGGFLLDGFQGDPAVTETRLHLLSSVTAELPEDKPRLICGVSRPDEVLECIERGVDLFESFFPYQVT
ERGCALTFTFDCQLNPEETLLQQNGIQEKIKGLDQAKKIEATGCNQEMTSFEINLKEKKYQEDFDPLVRG
CSCYCCKNHTRAYIHHLLMTNELLAGVLLMMHNFEHYFGFFCSIREALKNDTLAQLKELICRQMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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