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Report for CCDS37295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37295.1 Public Mus musculus 16 Liph 23 108 98 CCDS HistoryNCBI Gene:239759Re-query CCDS DB by CCDS ID:37295.1Re-query CCDS DB by GeneID:239759See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074230.11 ENSMUSP00000073853.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074230.11Link to Ensembl Protein Viewer:ENSMUSP00000073853.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074230Re-query CCDS DB by Protein ID:ENSMUSP00000073853
Original member Current member NCBI NM_153404.3 NP_700453.1 Accepted alive Link to Nucleotide Sequence:NM_153404.3Link to Protein Sequence:NP_700453.1Re-query CCDS DB by Nucleotide ID:NM_153404Re-query CCDS DB by Protein ID:NP_700453Link to BLAST:NP_700453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700453.1 421 Q8CIV3-3 421 100% 0 0

Chromosomal Locations for CCDS 37295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21956090 21956177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21958781 21958954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21962145 21962256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21965954 21966049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21967985 21968152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21976233 21976334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21981336 21981444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21983901 21984268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21995321 21995369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGCTGAGGCTATGTTTTTTCATCAGTTTCATGTGCTTGGTGAAATCAGACACGGATGAAACATGCCCGT
CCTTCACCAGACTGAGCTTCCACAGCGCGGTGGTTGGTACAGGACTCTCCGTGAGACTGATGCTCTACAC
ACAGAGAGACCAGACCTGTGCACAGATCATCAACTCCACAGCTCTGGGGAGCTTAAATGTGACCAAGAAA
ACCACTTTTATAATCCACGGTTTCCGGCCAACAGGCTCCCCTCCGGTTTGGATAGAGGAGCTGGTACAGA
GTTTGATCAGTGTACAAGAGATGAATGTAGTGGTTGTTGATTGGAATCGAGGAGCGACAACTGTGATATA
CCCCCATGCGTCTAGCAAGACCAGACAAGTAGCTTCTATTTTGAAGGAATTTATTGACCAGATGTTGGTC
AAAGGAGCTTCTCTGGACAACATTTACATGATTGGAGTAAGTCTAGGAGCCCACATAGCTGGATTTGTTG
GCGAGTCGTATGAGGGGAAGCTGGGGAGAGTCACAGGTCTTGACCCTGCAGGCCCTTTATTCAACGGGAG
ACCTCCTGAGGAGAGATTAGACCCCAGCGACGCACTGTTCGTGGACGTCATCCACTCTGACACTGACGGT
ATAAAGTACTTCAAGTGTGACCACCAGATGTCCGTCTACCTGTACCTTGCATCCCTGCAAAATAACTGCT
CCATCACGGCCTATCCCTGCGACTCCTATCGGGATTATAGGAATGGCAAGTGTGTCAGCTGTGGCGCTGG
ACAAATTGTGCCATGTCCCCGTGTAGGCTACTATGCTGACAGCTGGAAAGAGTACTTATGGGACAGAGAT
CCTCCGATGACGAAGGCGTTCTTCGACACAGCTGAGACAAAGCCATACTGCATGTATCATTATTTTGTGG
ACATTGTATCTTGGAACAAGAGCGTAAGAAGAGGGTTTATTACAATCAAACTGAGAGGCGAAGATGGCAA
TATCACAGAATCCAAAATCGATCATGAGCCATCTGCATTTGAGAAATACCATCAAGTGAGTCTCCTCGCA
AGATTTAATCGAGATCTGGATAAGGTGGCAGAGATTTCCTTGTTGTTCTCCACAGGGTCTGTAGTGGGCC
CAAAGTACAAGCTCAGGGTCCTGCAGATGAAGCTGAGGTCTCTGGCCCATCCAGACAGGCCTCACTTGTG
TCGATATGATCTCGTCCTTATGGAGAATGTTGAGACATCCTTCCAACCTATCCTGTGCTCTCAGCAGCAG
ATGTAG

Translation (421 aa):
MLRLCFFISFMCLVKSDTDETCPSFTRLSFHSAVVGTGLSVRLMLYTQRDQTCAQIINSTALGSLNVTKK
TTFIIHGFRPTGSPPVWIEELVQSLISVQEMNVVVVDWNRGATTVIYPHASSKTRQVASILKEFIDQMLV
KGASLDNIYMIGVSLGAHIAGFVGESYEGKLGRVTGLDPAGPLFNGRPPEERLDPSDALFVDVIHSDTDG
IKYFKCDHQMSVYLYLASLQNNCSITAYPCDSYRDYRNGKCVSCGAGQIVPCPRVGYYADSWKEYLWDRD
PPMTKAFFDTAETKPYCMYHYFVDIVSWNKSVRRGFITIKLRGEDGNITESKIDHEPSAFEKYHQVSLLA
RFNRDLDKVAEISLLFSTGSVVGPKYKLRVLQMKLRSLAHPDRPHLCRYDLVLMENVETSFQPILCSQQQ
M


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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