NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37294.1 Public Mus musculus 16 Map3k13 23 108 98 CCDS HistoryNCBI Gene:71751Re-query CCDS DB by CCDS ID:37294.1Re-query CCDS DB by GeneID:71751See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042065.6 ENSMUSP00000047388.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042065.6Link to Ensembl Protein Viewer:ENSMUSP00000047388.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042065Re-query CCDS DB by Protein ID:ENSMUSP00000047388
Original member Current member EBI ENSMUST00000231988.1 ENSMUSP00000156075.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231988.1Link to Ensembl Protein Viewer:ENSMUSP00000156075.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231988Re-query CCDS DB by Protein ID:ENSMUSP00000156075
Original member Current member EBI ENSMUST00000232240.1 ENSMUSP00000156202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232240.1Link to Ensembl Protein Viewer:ENSMUSP00000156202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232240Re-query CCDS DB by Protein ID:ENSMUSP00000156202
Original member Current member NCBI NM_172821.3 NP_766409.2 Accepted alive Link to Nucleotide Sequence:NM_172821.3Link to Protein Sequence:NP_766409.2Re-query CCDS DB by Nucleotide ID:NM_172821Re-query CCDS DB by Protein ID:NP_766409Link to BLAST:NP_766409.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766409.2 959 Q1HKZ5 959 100% 0 0

Chromosomal Locations for CCDS 37294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21891969 21892440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21898489 21898672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21903746 21903937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21905118 21905276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21905761 21905919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21906445 21906553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21908665 21908774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21911006 21911122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21914152 21914289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21921565 21922336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21925418 21925485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21926173 21926470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21927947 21928048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2880 nt):
ATGGCCAACCCTCAGGAGCACCTGAGCTGCTCCTCTTTGCCACACTTGCCCTTGACTGAGAACAAAACCT
CTGGTGGACGAAATGAGCTTGCAGCTATGGGGAACCACCCTTCACCCAAGCTCCCTGAGGACCCTCAGGA
GAGGGGGGCTATACAGTCAGAGCTGATGGAGATCACAGGCAGCCCGATCTCCACAACAGTGTTGACCAGT
GTAAGCGAGGATTCTAGGGGCCAGTTTGAGAACAGTGTTCTTCAGCTAAGGGAACAGGATGAGTCAGAGA
TGACCCTGTCTCTGGGGAACAGCAACACTGTGGATGGAGAGAACACGAACGGACCAGAAGACATCAAGAT
TCAGTTCAGCAGGTCAGGCAGCGGCAGCGGCGGGTTTCTCGAAGGACTGTTTGGATGTCTCAGGCCCGTG
TGGAATATCATTGGGAAGGCATATTCCACTGATTACAAGCTGCAGCAGCAAGATACTTGGGAAGTGCCAT
TTGAGGAAATCTCAGAGCTGCAATGGCTGGGTAGTGGAGCCCAAGGAGCTGTCTTCCTGGGCAAATTCCG
AGCAGAGGAGGTGGCCATCAAGAAGGTGAGAGAACAAAATGAGACGGACATCAAGCATCTGAGGAAGCTG
AAGCACCCTAACATCATCGCCTTCAAGGGTGTTTGCACTCAGGCCCCGTGCTACTGCATCATCATGGAGT
ACTGTGCCCACGGACAGCTGTACGAGGTCCTGAGAGCTGGCCGGAAGATCACGCCCCGGCTGCTTGTGGA
CTGGTCCACGGGAATCGCCAGTGGAATGAATTATCTCCATCTCCACAAGATTATACACCGTGACCTCAAG
TCGCCCAATGTTTTAGTGACTCACACAGATGCAGTGAAAATTTCAGACTTTGGCACATCTAAGGAACTCA
GTGATAAAAGCACCAAGATGTCCTTCGCTGGCACCGTCGCGTGGATGGCACCAGAGGTGATCCGGAATGA
GCCTGTCTCGGAGAAGGTGGACATATGGTCATTTGGTGTGGTACTTTGGGAGCTGCTGACAGGGGAGATT
CCCTACAAGGATGTGGACTCTTCCGCCATCATTTGGGGTGTCGGCAGCAACAGCTTGCATCTCCCAGTTC
CTTCCACTTGCCCGGATGGATTCAAAATCCTTATGAAACAGACATGGCAGAGTAAGCCTCGCAACCGACC
TTCTTTCAGGCAGACGCTCATGCATCTGGATATCGCGTCTGCAGATGTGCTCGCCACCCCTCAAGAAACT
TACTTCAAGTCTCAGGCTGAATGGAGAGAAGAAGTGAAGAAACATTTTGAGAAAATCAAAAGTGAAGGGA
CCTGTATACACCGATTAGATGAAGAACTGATTCGCCGGCGCAGGGAGGAGCTCAGGCATGCTCTGGATAT
TCGGGAGCACTACGAGAGAAAGCTCGAACGGGCTAACAATCTGTACATGGAGCTGAGCGCCATCATGCTG
CAGCTGGAGATGCGCGAGAAGGAGCTCCTTAAGCGAGAGCAAGCAGTGGAAAAGAAGTACCCTGGAACCT
ACAAACGACACCCTGTCCGTCCAATCATCCACCCGAATGCCATGGAGAAACTCATGAAAAGGAAGGGTGT
GCCTCACAAGGCTGGGGTGCAGACTAAGCGGCCAGACCTGTTGCGATCCGAAGGCATTCCTAGTACAGAA
GCGGTTCCCACTGCATCCCCCCTGTCTGGAAGTCCCAAAATGTCCACCGCAAGCAGCAGAAGCCGGTACC
GAAGCAAACCACGTCACCGCCGAGGGAACAGTAGAGGCAGCCATAGCGACTTCGCAGCAATCTTGAAAAC
CCAGCCCGCCCAGGAAAATTCACCCCACCCCACCTACATGCACCACACTCAGGCTCAGTGCGCTTCAGTC
CATCAACATAACCCTCTCCAGCAGCAATACCAGCAAATTCCTCCTGCCCAGCCTCAGAGCCGGCATCCCA
GACTCAATGCGCATGGGCAGGACATTGCAACCTGCGCCAATAACCTGAGGTACTTTGGCCCCGCAGCGGC
CCTGCGGAGTCCACTCAGCAACCATGCACAAAGACAGATGCCTGGCTCAAGCCCCGACCTCATCTCCACA
GCCATGGCTGCAGATTGGAGAAATTCTGAACTTGATCAAGACCAAGTTGGACCCTGGGGCTGTTGTCAGG
CTGAACCCTATGATCCCTGTTTCCAGTGCAGGCCAGAACATTCTGGGTCTTTAGATGTTCCCACTACTGA
GCCAGTGGGGAGGAGCCCAGACCTTTCCAGTTCACCAGCACACAATCCTCTTTCAGGAAATGCCCAAGGC
TCTGAGAGAACAGGGGCAAATGGATTCAGTGGCTGTCAGTCTGGTATTTCTCATCAATTCACACCCCCAA
TGCTACCTCAGAAGACACGGCCCCTTCAGAAGAGTGGCGATGACTCCTCAGAAGAGGAAGGGGAAGTGGA
CAGTGAAGTAGAATTTCCTCGACGACAGAGGCCTCACCGCTGCATTAGCAGTTACCAGTCATACTCAACC
TTTAGCTCCGAGAACTTCTCTGTGTCTGATGGAGAGGAGGGCAACACTAGTGACCACTCGAACAGTCCCG
ATGAATCCGCCAACAGACGGCAGGACCGCCTGGCAGAGACGCTGGACGACCTGCTGTCTCAGACACCCGA
GGCCCCCATCGAGATCTCCTCCCACTCAGATGGGCTGTCTGACAAGGAGTGTGCTGTTCGGCGCGTGAAG
ACACAGATGTCCCTAGGCAAGCTGTGTGCCGAGGAGCGCGGCTACGAGAACCCTGTGCAGTTTGGAGACT
CGGACTGTGACTCTTCAGAGGGAGAGTGTTCCGATGCCACAGTTAGGACCAGCAAGAACTACAGCTCTGC
CACCTGGTGA

Translation (959 aa):
MANPQEHLSCSSLPHLPLTENKTSGGRNELAAMGNHPSPKLPEDPQERGAIQSELMEITGSPISTTVLTS
VSEDSRGQFENSVLQLREQDESEMTLSLGNSNTVDGENTNGPEDIKIQFSRSGSGSGGFLEGLFGCLRPV
WNIIGKAYSTDYKLQQQDTWEVPFEEISELQWLGSGAQGAVFLGKFRAEEVAIKKVREQNETDIKHLRKL
KHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAGRKITPRLLVDWSTGIASGMNYLHLHKIIHRDLK
SPNVLVTHTDAVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEI
PYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKILMKQTWQSKPRNRPSFRQTLMHLDIASADVLATPQET
YFKSQAEWREEVKKHFEKIKSEGTCIHRLDEELIRRRREELRHALDIREHYERKLERANNLYMELSAIML
QLEMREKELLKREQAVEKKYPGTYKRHPVRPIIHPNAMEKLMKRKGVPHKAGVQTKRPDLLRSEGIPSTE
AVPTASPLSGSPKMSTASSRSRYRSKPRHRRGNSRGSHSDFAAILKTQPAQENSPHPTYMHHTQAQCASV
HQHNPLQQQYQQIPPAQPQSRHPRLNAHGQDIATCANNLRYFGPAAALRSPLSNHAQRQMPGSSPDLIST
AMAADWRNSELDQDQVGPWGCCQAEPYDPCFQCRPEHSGSLDVPTTEPVGRSPDLSSSPAHNPLSGNAQG
SERTGANGFSGCQSGISHQFTPPMLPQKTRPLQKSGDDSSEEEGEVDSEVEFPRRQRPHRCISSYQSYST
FSSENFSVSDGEEGNTSDHSNSPDESANRRQDRLAETLDDLLSQTPEAPIEISSHSDGLSDKECAVRRVK
TQMSLGKLCAEERGYENPVQFGDSDCDSSEGECSDATVRTSKNYSSATW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH