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Report for CCDS37233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37233.1 Public Mus musculus 15 Hnrnpa1 23 108 98 CCDS HistoryNCBI Gene:15382Re-query CCDS DB by CCDS ID:37233.1Re-query CCDS DB by GeneID:15382See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087351.8 ENSMUSP00000084609.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087351.8Link to Ensembl Protein Viewer:ENSMUSP00000084609.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000087351Re-query CCDS DB by Protein ID:ENSMUSP00000084609
Original member Current member EBI ENSMUST00000230171.1 ENSMUSP00000155833.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230171.1Link to Ensembl Protein Viewer:ENSMUSP00000155833.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230171Re-query CCDS DB by Protein ID:ENSMUSP00000155833
Original member NCBI NM_010447.5 NP_034577.1 Updated not alive Link to Nucleotide Sequence:NM_010447.5Link to Protein Sequence:NP_034577.1Re-query CCDS DB by Nucleotide ID:NM_010447Re-query CCDS DB by Protein ID:NP_034577
Current member NCBI NM_010447.6 NP_034577.1 Accepted alive Link to Nucleotide Sequence:NM_010447.6Link to Protein Sequence:NP_034577.1Re-query CCDS DB by Nucleotide ID:NM_010447Re-query CCDS DB by Protein ID:NP_034577Link to BLAST:NP_034577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034577.1 320 P49312-1 320 100% 0 0

Chromosomal Locations for CCDS 37233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103240514 103240528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103241080 103241196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103241446 103241592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103241903 103242113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103242206 103242298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103242380 103242472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103242644 103242718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103243625 103243780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103243959 103244014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGTCTAAGTCCGAGTCTCCCAAGGAGCCAGAACAGCTGCGGAAGCTCTTCATCGGAGGGCTGAGCTTCG
AAACAACCGACGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGAACACTAACAGACTGTGTGGTAATGAG
AGATCCAAACACCAAGAGATCCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAAGAAGTGGATGCT
GCCATGAATGCAAGACCACACAAGGTGGATGGAAGAGTTGTGGAACCTAAGAGAGCTGTCTCAAGAGAAG
ATTCTCAGCGACCAGGTGCCCACTTAACTGTGAAAAAGATCTTTGTTGGTGGTATTAAAGAAGACACTGA
AGAACATCACCTACGAGATTATTTTGAGCAGTATGGGAAGATTGAAGTGATAGAAATTATGACTGACAGA
GGCAGTGGGAAAAAGAGGGGCTTTGCTTTTGTTACCTTTGATGACCATGACTCTGTGGATAAGATTGTTA
TTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTAAGAAAGGCTCTGTCGAAGCAAGAGATGGC
TAGTGCTTCATCCAGTCAGAGAGGTCGCAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGCGGTTTT
GGTGGCAATGACAATTTTGGTCGAGGAGGGAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCGTGGTG
GTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGCAATGATGGAAGCAATTTTGGAGGTGG
TGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCCAATTTTGGGCCGATGAAGGGAGGAAAC
TTTGGAGGCAGGAGCTCTGGCCCTTATGGTGGTGGAGGCCAGTACTTTGCTAAACCACGGAACCAAGGTG
GCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGGAGGTTCTAA

Translation (320 aa):
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA
AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR
GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGF
GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGN
FGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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