NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37138.1 Public Mus musculus 15 Triobp 23 108 98 CCDS HistoryNCBI Gene:110253Re-query CCDS DB by CCDS ID:37138.1Re-query CCDS DB by GeneID:110253See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37138.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109687.8 ENSMUSP00000105309.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109687.8Link to Ensembl Protein Viewer:ENSMUSP00000105309.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109687Re-query CCDS DB by Protein ID:ENSMUSP00000105309
Original member Current member NCBI NM_001024716.1 NP_001019887.1 Accepted alive Link to Nucleotide Sequence:NM_001024716.1Link to Protein Sequence:NP_001019887.1Re-query CCDS DB by Nucleotide ID:NM_001024716Re-query CCDS DB by Protein ID:NP_001019887Link to BLAST:NP_001019887.1

Chromosomal Locations for CCDS 37138.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78983062 78983208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78987892 78987948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78990817 78990885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78990985 78991074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78991329 78991438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78992904 78993432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78994042 78994152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78999797 78999944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79001521 79001623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79002048 79002207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79002285 79002398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79003706 79003792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79004445 79004603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGGGCGGATGGAAGGGGCCGGGGCAGCTCCGGGGAAGGGAAGGGCTGGAGCTACGGCGTCCGGCGGCCG
AGAGGGGCGGTGGGCTGGGTGCGCCGCGGAGCCCGGCCCGAGTGTCCCGTGCAGCGTCCCCGGGTGCCGC
CATGACGCCCGATCTGCTCAACTTCAAGAAAGGATGGATGTCAATCTTGGATGAGCCTGGAGAGTGGAAA
AAGCATTGGTTTGTGCTGACGGATTCAAGCCTCAAATATTACAGAGACTCCACGGCTGAGGAGGCAGATG
AGCTGGACGGTGAGATCGACCTGCGGTCCTGTACTGACGTCACAGAGTATGCGGTCCAGCGCAACTATGG
CTTCCAGATCCACACCAAGGACGCCGTTTATACCCTGTCGGCCATGACCTCGGGCATCCGGCGGAACTGG
ATTGAGGCTCTCAGGAAAACTGTGCGGCCAACTTCAGCCCCAGATGTCACCAAGCTCTCCGACTGCAATA
AAGAAAACACGCTGCATGGCTATGGCACCCAGAAGAGCTCCCTGAAGATAGGGGAGCAGCGGACAGGCTC
TGAGGTTATCGGCCGGGGTGGTCCTCGCAAGGCGGATGGACCACGGCCGTCACTGGACTACGTGGAGCTC
TCTCCATTAGCGCCAAGCTCCCCACAGCGCATGCGCACTCTCTCCCGCTCCACTCCCGAGCGCCCCACCA
AGCAGGAGGATCTGGAGCGGGACTTGGCCCAACGCTCTGAGGAAAGACGCAAGTGGTTCGAGTCCACGGA
CGGCAGGACCCCAGAGACGCCCAGTGGCGATGGGTCTCGAAGGGGCCTGGGTGCCCCCCTGACTGATGAC
CAGCAGAGCAGGCTCAGTGAGGAGATTGAGAAGAAGTGGCAGGAGTTGGAAAAGCTGCCCCTGCGGGAGA
ACAAGCGAGTGCCACTCACCGCCCTGCTCAACCAAGCCCACAACGATCGTCGGGGACCTACAAGTGACAG
CCATGAGGCCCTGGAGAAGGAGGTCCAGTCTCTCCGTGCCCAGCTGGAGGCTTGGCGTCTCCGAGGGGAA
GCTCCTCAGAATGCACCGAGACTCCAGGAGGACAGCCATATCCCCCCAGGCTACATCTCGCAGGAAGCCT
GTGAGCGCAGCCTGGCAGAGATGGAGTCCTCACACCAGCAGGTGATGGAGCAGCTGCAGCGGCACCATGA
GCGAGAGCTGCAGCGGCTGCAGCAGGAGAAGGAGTGGCTCCTGGCCGAGGAGACGGCTGCCACGGCCTCA
GCTATTGAAGCCATGAAGAAGGCGTATCAAGAAGAGCTAAGCCGGGAGCTGAGCAAAACCCGGAGTCTCC
AGCAGGGCCCAGAGAGCCTTCGGAAGCAACACCAGCTGGACATGGAGGCGCTAAAGCAGGAGCTGCAGGT
GCTATCTGAGAGGTACTCGCAGAAGTGCCTGGAGATCGGGGCCCTGACAAGGCAGGCAGAAGAGCGTGAG
CACACCCTGCGGCGCTGCCAGCAAGAGGGCCAGGAGCTGCTGCGCCACAACCAGGAGCTGCACTCCCACC
TGTCCGAGGAGATCGACCGTCTGCGCAGCTTCATCGCCTCGCAGGGCACAGGCAACAGCTGCGGGCGCAG
CAATGAGAGGAGTTCCTGTGAGCTGGAGGTGCTGCTGCGAGTGAAGGAGAATGAACTCCAGTACCTGAAG
AAGGAGGTGCAGTGTCTCCGAGATGAGCTCCAGGTGATACAGAAGGACAAGCGCTTCACGGGGAAGTACC
AGGATGTGTACGTGGAGCTGAACCACATCAAGACTCGGTCGGAGCGTGAGATCGAGCAGCTGAAGGAGCA
CCTGCGCCTGGCCATGGCTGCCCTGCAGGAGAAGGAGGCTGTGAGGAACAGCTTGGCTGAGTAG

Translation (627 aa):
MGGWKGPGQLRGREGLELRRPAAERGGGLGAPRSPARVSRAASPGAAMTPDLLNFKKGWMSILDEPGEWK
KHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYTLSAMTSGIRRNW
IEALRKTVRPTSAPDVTKLSDCNKENTLHGYGTQKSSLKIGEQRTGSEVIGRGGPRKADGPRPSLDYVEL
SPLAPSSPQRMRTLSRSTPERPTKQEDLERDLAQRSEERRKWFESTDGRTPETPSGDGSRRGLGAPLTDD
QQSRLSEEIEKKWQELEKLPLRENKRVPLTALLNQAHNDRRGPTSDSHEALEKEVQSLRAQLEAWRLRGE
APQNAPRLQEDSHIPPGYISQEACERSLAEMESSHQQVMEQLQRHHERELQRLQQEKEWLLAEETAATAS
AIEAMKKAYQEELSRELSKTRSLQQGPESLRKQHQLDMEALKQELQVLSERYSQKCLEIGALTRQAEERE
HTLRRCQQEGQELLRHNQELHSHLSEEIDRLRSFIASQGTGNSCGRSNERSSCELEVLLRVKENELQYLK
KEVQCLRDELQVIQKDKRFTGKYQDVYVELNHIKTRSEREIEQLKEHLRLAMAALQEKEAVRNSLAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH