NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36788.1 Public Mus musculus 13 Itga1 23 108 98 CCDS HistoryNCBI Gene:109700Re-query CCDS DB by CCDS ID:36788.1Re-query CCDS DB by GeneID:109700See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061673.8 ENSMUSP00000077132.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061673.8Link to Ensembl Protein Viewer:ENSMUSP00000077132.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061673Re-query CCDS DB by Protein ID:ENSMUSP00000077132
Original member Current member NCBI NM_001033228.3 NP_001028400.2 Accepted alive Link to Nucleotide Sequence:NM_001033228.3Link to Protein Sequence:NP_001028400.2Re-query CCDS DB by Nucleotide ID:NM_001033228Re-query CCDS DB by Protein ID:NP_001028400Link to BLAST:NP_001028400.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028400.2 1179 Q3V3R4 1179 100% 0 0

Chromosomal Locations for CCDS 36788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 114960090 114960134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114965598 114965714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114966516 114966608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114968204 114968308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114968457 114968561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114970479 114970592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114974093 114974195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114975598 114975687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114977600 114977676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114980773 114980853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114982732 114982941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114985072 114985182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114986130 114986266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114987603 114987769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114990060 114990190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114992267 114992524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114993794 114993937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114996921 114997063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115001539 115001683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115002250 115002323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115006904 115007069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115012160 115012310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115016112 115016260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115030036 115030163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115030883 115030994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115031105 115031193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115035273 115035385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115049283 115049403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115101471 115101531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3540 nt):
ATGGTCCCCAGGCGTCCTGCTAGCCTAGAGGTCACTGTAGCCTGCATCTGGCTTCTCACCGTTATCCTAG
GCGTCTGCATCTCCTTCAACGTTGATGTCAAAAACTCCATGAGCTTCAGTGGTCCAGTGGAGGACATGTT
TGGATACACCGTTCAACAGTATGAAAACGAAGAAGGCAAATGGGTTCTTATTGGTTCTCCTTTAGTTGGC
CAACCCAAAGCAAGAACTGGAGATGTCTATAAGTGTCCAGTTGGGAGAGAGAGATCAATGCCTTGTGTGA
AGTTGGATTTACCAGTTAACACATCGATTCCTAATGTCACAGAAATAAAGGAAAACATGACATTTGGATC
AACTTTAGTCACCAATCCGAAGGGAGGATTTCTGGCATGTGGGCCCTTGTATGCCTATAGATGTGGACAT
TTGCATTATACGACTGGCATATGTTCTGATGTCAGCCCTACATTTCAAGTTGTGAACTCGTTCGCCCCTG
TACAAGAATGTAGCACACAGCTTGACATAGTCATCGTCCTAGATGGCTCCAACAGCATCTACCCCTGGGA
AAGTGTCACTGCCTTTTTAAACGACCTTCTTAAGAGGATGGACATTGGCCCCAAACAGACACAGGTTGGA
ATTGTACAATATGGAGCAAATGTAACACATGAGTTCAACCTCAATAAGTATTCATCCACAGAAGAGGTCC
TGGTGGCAGCAAACAAAATAGGCCGCAGGGGTGGTCTCCAGACGATGACAGCCCTTGGAATAGACACAGC
CAGGAAAGAGGCATTCACTGAAGCTCGGGGGGCCAGAAGGGGAGTGAAAAAAGTCATGGTTATTGTGACT
GATGGAGAATCGCATGACAACTATCGCCTGAAACAGGTCATCCAAGACTGTGAGGATGAAAACATTCAGC
GATTTTCCATAGCTATCCTTGGCCACTATAACAGGGGGAACTTAAGCACCGAAAAATTTGTGGAGGAGAT
AAAATCAATCGCAAGTGAGCCCACCGAAAAGCACTTCTTCAACGTCTCAGATGAGTTGGCCCTGGTCACT
ATTGTTAAAGCTCTGGGAGAAAGGATATTTGCTTTGGAAGCTACAGCTGACCAGTCAGCAGCTTCGTTTG
AAATGGAGATGTCTCAGACCGGCTTCAGTGCTCATTATTCACAGGACTGGGTCATGCTTGGAGCTGTTGG
AGCCTATGACTGGAACGGAACTGTGGTCATGCAGAAGGCTAACCAGATTGTCATCCCTCATAACACCACC
TTTCAAACTGAGCCCACCAAGATGAACGAGCCTCTTGCTTCTTACTTGGGTTACACAGTGAACTCTGCCA
CCATCCCGGGAGATGTGCTCTATATCGCTGGGCAGCCTCGGTACAATCACACCGGCCAGGTCGTCATCTA
CAAGATGGAGGATGGGGACGTCAACATTCTGCAGACACTCAGTGGAGAGCAGATCGGATCCTACTTTGGT
AGCGTCTTAACCACAATTGACATCGACAAAGATTCTTACACTGATCTGCTTCTCGTCGGGGCTCCCATGT
ATATGGGGACAGAGAAAGAGGAACAGGGCAAGGTGTACGTGTACGCTGTGAATCAGACGAGGTTTGAATA
TCAAATGAGCCTGGAACCAATTAAGCAGACCTGCTGTTCATCCCTGAAGGATAATTCATGCACAAAAGAA
AACAAGAATGAGCCCTGTGGGGCCCGTTTTGGAACAGCAGTTGCTGCTGTAAAAGACCTCAACGTGGATG
GCTTTAATGACGTCGTGATTGGAGCTCCCCTGGAAGACGACCACGCAGGAGCTGTGTACATTTATCATGG
CAGTGGCAAGACCATAAGGAAAGAGTATGCGCAACGCATTCCCTCAGGTGGGGATGGGAAGACGCTGAAA
TTTTTTGGCCAGTCTATCCACGGAGAGATGGATTTAAATGGCGATGGTCTGACTGACGTGACCATTGGAG
GCCTTGGAGGAGCTGCCCTCTTCTGGGCCAGAGATGTGGCTGTAGTTAAAGTGACCATGAATTTTGAACC
CAACAAAGTGAATATTCAAAAGAAAAACTGCCGTGTGGAGGGCAAAGAAACAGTATGCATAAATGCTACA
ATGTGTTTTCATGTGAAATTGAAGTCTAAAGAAGACTCAGTTTACGAGGCTGATCTGCAGTACCGTGTCA
CCCTTGATTCGCTGAGGCAGATATCACGGAGCTTTTTTTCTGGAACTCAGGAAAGGAGGATTCAAAGAAA
CCTCACCGTTCGAGAATCCGAATGCATCAGGCACTCCTTCTACATGTTGGATAAGCACGACTTTCAGGAC
TCCGTGAGAGTGACTTTGGATTTTAACCTCACTGATCCAGAAAATGGGCCCGTGCTCGATGACGCTCTGC
CAAACTCAGTCCATGGACATATTCCTTTTGCCAAAGACTGTGGGAACAAGGAAAGATGCGTTTCAGACCT
CACCCTGGATGTGTCCACAACAGAAAAGAACCTGCTGATTGTCAGATCCCAGAATGACAAGTTCAATGTC
AGCCTCACCGTCAAAAACAAGGGAGACAGTGCGTACAACACCCGGACAGTGGTTCAGTATTCTCCAAATC
TGATTTTTTCAGGAATTGAGGAGATCCAAAAAGATAGCTGCGAATCCAATCAAAATATCACGTGTAGAGT
TGGATATCCTTTCCTGAGGACAGGAGACGTGGTTAACTTCAAAATAATATTCCAGTTTAATACATCACAT
CTCTCAGAAAATGCAATTATTCATTTAAGTGCAACAAGTGACAGTGAAGAGCCCCTGGAATCTCTTTACG
ATAATGAAGTAAATATTTCCATCCCCGTAAAATATGAAGTCGGACTGCAGTTTTACAGTTCTGCGAGTGA
ACACCACATTTCAGTTGCTGCCAATGAGACTGTTCCTGAGCTGATTAATTCCACCAAGGACATTGGGGAT
GAAATTAATGTCTTCTACACGATTAGAAAAAGAGGGCATTTCCCAATGCCAGAACTTCGGCTGGCAATTT
CATTTCCCAATCTGACGTCAGATGGCTATCCTGTACTGTACCCAACTGGATGGTCATCTTCTGATAATGT
AAACTGCAGACCTCGAAGCCTTGAGGACCCTTTGGGTATCAACTCTGGGAAGAAAATGACAATATCAAAG
TCTGAGGTTCTCAAAAGAGGCACAATCCAGGACTGCAGTACCTGCAAGATTGCTACCATCACGTGTCATC
TCCTTCCCTCGGATGTGAGTCAAGTGAATGTCTCACTCATCTTGTGGAAACCAACTTTCATAAAAGCACA
TTTTTCCAGCTTAAATCTTACCATACGGGGAGAACTTCAGAGTGAAAACTCATCGCTGACTTTAAGCAGC
AGCAACCGGAAACGAGAGCTGGCTATTCAGATATCCAAAGACGGGCTCCCAGGCCGAGTGCCGCTGTGGG
TTATCCTCCTGAGCGCCTTTGCGGGACTCCTGCTGTTAATGCTGCTTATATTAGCTCTGTGGAAGATTGG
ATTCTTCAAAAGGCCACTAAAGAAGAAAATGGAGAAATGA

Translation (1179 aa):
MVPRRPASLEVTVACIWLLTVILGVCISFNVDVKNSMSFSGPVEDMFGYTVQQYENEEGKWVLIGSPLVG
QPKARTGDVYKCPVGRERSMPCVKLDLPVNTSIPNVTEIKENMTFGSTLVTNPKGGFLACGPLYAYRCGH
LHYTTGICSDVSPTFQVVNSFAPVQECSTQLDIVIVLDGSNSIYPWESVTAFLNDLLKRMDIGPKQTQVG
IVQYGANVTHEFNLNKYSSTEEVLVAANKIGRRGGLQTMTALGIDTARKEAFTEARGARRGVKKVMVIVT
DGESHDNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVT
IVKALGERIFALEATADQSAASFEMEMSQTGFSAHYSQDWVMLGAVGAYDWNGTVVMQKANQIVIPHNTT
FQTEPTKMNEPLASYLGYTVNSATIPGDVLYIAGQPRYNHTGQVVIYKMEDGDVNILQTLSGEQIGSYFG
SVLTTIDIDKDSYTDLLLVGAPMYMGTEKEEQGKVYVYAVNQTRFEYQMSLEPIKQTCCSSLKDNSCTKE
NKNEPCGARFGTAVAAVKDLNVDGFNDVVIGAPLEDDHAGAVYIYHGSGKTIRKEYAQRIPSGGDGKTLK
FFGQSIHGEMDLNGDGLTDVTIGGLGGAALFWARDVAVVKVTMNFEPNKVNIQKKNCRVEGKETVCINAT
MCFHVKLKSKEDSVYEADLQYRVTLDSLRQISRSFFSGTQERRIQRNLTVRESECIRHSFYMLDKHDFQD
SVRVTLDFNLTDPENGPVLDDALPNSVHGHIPFAKDCGNKERCVSDLTLDVSTTEKNLLIVRSQNDKFNV
SLTVKNKGDSAYNTRTVVQYSPNLIFSGIEEIQKDSCESNQNITCRVGYPFLRTGDVVNFKIIFQFNTSH
LSENAIIHLSATSDSEEPLESLYDNEVNISIPVKYEVGLQFYSSASEHHISVAANETVPELINSTKDIGD
EINVFYTIRKRGHFPMPELRLAISFPNLTSDGYPVLYPTGWSSSDNVNCRPRSLEDPLGINSGKKMTISK
SEVLKRGTIQDCSTCKIATITCHLLPSDVSQVNVSLILWKPTFIKAHFSSLNLTIRGELQSENSSLTLSS
SNRKRELAIQISKDGLPGRVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH