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Report for CCDS36784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36784.1 Public Mus musculus 13 Snx18 23 108 98 CCDS HistoryNCBI Gene:170625Re-query CCDS DB by CCDS ID:36784.1Re-query CCDS DB by GeneID:170625See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109241.4 ENSMUSP00000104864.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109241.4Link to Ensembl Protein Viewer:ENSMUSP00000104864.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109241Re-query CCDS DB by Protein ID:ENSMUSP00000104864
Original member Current member NCBI NM_130796.4 NP_570614.2 Accepted alive Link to Nucleotide Sequence:NM_130796.4Link to Protein Sequence:NP_570614.2Re-query CCDS DB by Nucleotide ID:NM_130796Re-query CCDS DB by Protein ID:NP_570614Link to BLAST:NP_570614.2

Chromosomal Locations for CCDS 36784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 113594609 113594862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113616802 113618395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGCGCTGCGCGCCCGGGCGCTCTACGACTTTAAGTCCGAGAACCCCGGTGAGATCTCCCTGCGGGAGC
AC
GAGGTGCTGAGCCTGTGCAGCGAGCAGGACATCGAGGGCTGGCTCGAAGGGATCAACAGCCGCGGCGA
C
CGCGGCCTCTTCCCGGCCTCCTACGTGCAGGTGATCCGTGCGCCGGAGCCTGGCCCTCCGGCCGACGGC
GGC
CCGGGAGCTCCGGCCCGCTACGCCAACGTGCCGCCCGGCGGCTTCGAGCCTCTGCCCGCCGCGCCAC
CC
GCCGCCTTCCCGCCGCTGCTGCAGCCGCAGGCGTCACCCGGTTCCTTCCAGCCGCCGGGCGCCGGCTT
T
CCCTACGGCGGGGGCGCCCTGCAGCCGTCGCCCCAGCAGCTCTACGGTGGATACCAGGCCAGCCTGGGC
AGC
GACGATGACTGGGACGACGAGTGGGACGACAGCTCCACGGTGGCCGATGAGCCAGGCGCGCTGGGCA
GC
GGCGCGTACCCGGACCTCGACGGCTCGTCGTCGGCGGGCGGCGGTGCGGCCGGCCGCTACCGCCTGTC
C
ACCCGCTCGGACCTGTCTCTGGGCTCCCGCGGCGTCTCGGCGCCCCCGGCGCACCAAGCGTCTGGAGCC
AAG
AGCTCGGCCACGGTGAGCCGCAACCTCAATCGCTTCTCCACCTTCGTCAAGTCGGGCGGGGAGGCCT
TC
GTGCTGGGAGAGGCGTCAGGCTTCGTGAAGGATGGGGACAAGCTGTGCGTGGTGCTGGGTCCCTACGG
C
CCCGAGTGGCAGGAGAACCCCTACCCCTTCCAGTGCACCATCGACGACCCCACCAAGCAGACCAAGTTC
AAG
GGCATGAAGAGCTACATCTCTTACAAGCTGGTGCCCACGCATACCCAGGTGCCCGTGCACAGGCGCT
AT
AAGCACTTCGATTGGCTGTATGCGCGCCTGGCGGAGAAATTCCCAGTCATCTCGGTGCCCCATCTGCC
T
GAGAAGCAGGCCACCGGGCGCTTCGAAGAGGACTTCATCTCCAAACGCAGGAAGGGTCTGATCTGGTGG
ATG
AACCACATGGCCAGCCACCCGGTGCTGGCGCAGTGCGACGTCTTCCAGCATTTCCTGACCTGCCCCA
GC
AGCACTGATGAGAAGGCCTGGAAACAGGGTAAGCGGAAGGCTGAGAAGGATGAGATGGTGGGCGCCAA
C
TTCTTCCTCACTCTGAGCACCCCACCTGCCGCCGCCCTGGACCTGCAGGAGGTGGAGAGCAAGATAGAT
GGC
TTCAAATGCTTCACCAAGAAGATGGACGACAGTGCGTTGCAGCTCAACCACACCGCCAACGAGTTTG
CG
CGCAAGCAGGTGACTGGCTTCAAGAAGGAGTATCAGAAGGTGGGCCAGTCCTTCCGGGGTCTCAGCCA
A
GCCTTTGAGCTGGATCAGCAGGCCTTCTCCGTGGGTCTGAATCAGGCCATTGCCTTCACTGGAGACGCC
TAC
GACGCCATCGGCGAACTCTTCGCTGAGCAGCCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAG
CA
CTGTATCAGGGGCACCTGGCCAACTTCCCAGACATCATCCATGTTCAGAAAGGAGCTCTTACCAAAGT
A
AAGGAGAGTAGGCGACACGTGGAAGAAGGGAAGATGGAGGTCCAAAAAGCTGACGGCATTCAAGACCGC
TGT
AACACTATTTCCTTCGCCACGTTGGCCGAGATTCATCACTTCCATCAAATTAGAGTAAGAGACTTTA
AA
TCACAGATGCAACATTTTTTACAACAACAAATAATATTTTTCCAAAAAGTGACCCAGAAGTTGGAAGA
G
GCGCTTCACAAATACGACAGCGTCTAA


Translation (615 aa):
MALRARALYDFKSENPGEISLREHEVLSLCSEQDIEGWLEGINSRGDRGLFPASYVQVIRAPEPGPPADG
G
PGAPARYANVPPGGFEPLPAAPPAAFPPLLQPQASPGSFQPPGAGFPYGGGALQPSPQQLYGGYQASLG
S
DDDWDDEWDDSSTVADEPGALGSGAYPDLDGSSSAGGGAAGRYRLSTRSDLSLGSRGVSAPPAHQASGA
K
SSATVSRNLNRFSTFVKSGGEAFVLGEASGFVKDGDKLCVVLGPYGPEWQENPYPFQCTIDDPTKQTKF
K
GMKSYISYKLVPTHTQVPVHRRYKHFDWLYARLAEKFPVISVPHLPEKQATGRFEEDFISKRRKGLIWW
M
NHMASHPVLAQCDVFQHFLTCPSSTDEKAWKQGKRKAEKDEMVGANFFLTLSTPPAAALDLQEVESKID
G
FKCFTKKMDDSALQLNHTANEFARKQVTGFKKEYQKVGQSFRGLSQAFELDQQAFSVGLNQAIAFTGDA
Y
DAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQK
GALTKVKESRRHVEEGKMEVQKADGIQDR
C
NTISFATLAEIHHFHQIRVRDFKSQMQHFLQQQIIFFQKVTQKLEEALHKYDSV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser