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Report for CCDS36744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36744.1 Public Mus musculus 13 Serinc5 23 108 98 CCDS HistoryNCBI Gene:218442Re-query CCDS DB by CCDS ID:36744.1Re-query CCDS DB by GeneID:218442See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049488.8 ENSMUSP00000047547.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049488.8Link to Ensembl Protein Viewer:ENSMUSP00000047547.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049488Re-query CCDS DB by Protein ID:ENSMUSP00000047547
Original member Current member NCBI NM_172588.2 NP_766176.1 Accepted alive Link to Nucleotide Sequence:NM_172588.2Link to Protein Sequence:NP_766176.1Re-query CCDS DB by Nucleotide ID:NM_172588Re-query CCDS DB by Protein ID:NP_766176Link to BLAST:NP_766176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766176.1 461 Q8BHJ6 461 100% 0 0

Chromosomal Locations for CCDS 36744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 92611261 92611287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92661018 92661185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92682755 92682936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92683356 92683438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92685145 92685238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92688619 92688830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92690944 92691039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92693472 92693598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92701677 92701743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92705511 92705550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92706140 92706284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92707993 92708137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGTCTGCCCGGTGCTGTGCTGGCCAGTTGGCCTGCTGTTGCGGATCTGCTGGCTGCTCCCTCTGCTGTG
GCTGCTGCCCTAAGTTCCGACAGTCTCGGACCACCCGCTTCATGTATTTATTCTACTTCATCCTGGTCAT
CGCCCTCTGCTGTGTGATGATGACACCCTCTGTGATGAAGCAGGTGAAGGACCACATTCCCTTTTTTGAA
GAGTTCTGTAAAAAGACTCAAGCCGGTGGTGACGCCTGTGAGAACCTGGTAGGGTATTCTGCGGTGTACA
GAGTCTGCTTTGGAATGGCTTGTTTCTTTGCTCTGTTTTGCCTGCTGACCTTAAAAGTCAACAACAGCAA
AAGTTGCCGGGCCTACATTCACAACGGCTTTTGGTTCTTTAAATTGCTGCTGTTAGGGGCCATGTGCTCA
GGAGCGTTCTTCATTCCGGATCAGGAGACCTTTCTGAAAGTCTGGCGCTATGTGGGAGCTGGGGGCAGCT
TCCTCTTCATTTGTATCCAGCTCCTCCTGATTGTGCAGTTTGCACATAAGTGGAACAAGAACTGGACTGC
AGGCACCGTCCGTAATAAGCTGTGGTACGCCTCCCTGTCCCTGGTGACACTCATCATGTATTCCGTTGCT
GTTGGAGGCTTGGCTTTGATGGCAGTGTTTTACACACAGTGGGACGACTGCATGGACAACAAGATTCTCC
TGGGAGTGCACGGTGGCCTATGCGTGCTAATCTCTCTGGTAGCCATCTCACCCTGCGTCCAGAATCGACA
GCCACACTCTGGGCTGCTGCAGTCAGGGCTCATAAGCTGTTATGTCACCTACCTCACCTTCTCAGCACTG
ACCAGCAAGCCTGAAAAAAAAGTCCTGGATGAACATGGGAAGAATGTTACCATATGTGCGCCTGACTTTG
GTCAAGACCTGCATAGAGATGAAAACATGGTGACTTGGCTGGGCACCCTTCTTCTAATTGTGTGCATCTC
ATATTCATGTTTGACATCGACAACAAGGTCGAGCTCGGATGCTCTGCAGAGTCGATACGGAGCGCCAGAG
CTGGAAGTGGCCCGGTGCTGTTTCTGCTTTGGTCCAGATGGAGAAGACACTGAAGAGCAGCAGAACGTCA
AGAAGGGACCCAGGGTGATTTATGATGAGAAGAAAGGCACCGTGTACAGCTACTCCTATTTCCACTTCGT
CTTCTTCCTGGCTTCCCTCTACGTGATGATGACTCTGACCAGCTGGTTCCACTATGAAAATGCCACCATT
AAGACCTTCTTCTCAGGCTGGTCCGTCTTCTGGGTCAAGATGGCCTCCTGCTGGATGTGTGTGCTGCTGT
ACCTGCAGACCTTGGTGGCCCCTCTCTGCTGTCCCTCCAGGCAGTTCTCTGTGTGA

Translation (461 aa):
MSARCCAGQLACCCGSAGCSLCCGCCPKFRQSRTTRFMYLFYFILVIALCCVMMTPSVMKQVKDHIPFFE
EFCKKTQAGGDACENLVGYSAVYRVCFGMACFFALFCLLTLKVNNSKSCRAYIHNGFWFFKLLLLGAMCS
GAFFIPDQETFLKVWRYVGAGGSFLFICIQLLLIVQFAHKWNKNWTAGTVRNKLWYASLSLVTLIMYSVA
VGGLALMAVFYTQWDDCMDNKILLGVHGGLCVLISLVAISPCVQNRQPHSGLLQSGLISCYVTYLTFSAL
TSKPEKKVLDEHGKNVTICAPDFGQDLHRDENMVTWLGTLLLIVCISYSCLTSTTRSSSDALQSRYGAPE
LEVARCCFCFGPDGEDTEEQQNVKKGPRVIYDEKKGTVYSYSYFHFVFFLASLYVMMTLTSWFHYENATI
KTFFSGWSVFWVKMASCWMCVLLYLQTLVAPLCCPSRQFSV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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