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Report for CCDS36736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36736.1 Public Mus musculus 13 Arrdc3 23 108 98 CCDS HistoryNCBI Gene:105171Re-query CCDS DB by CCDS ID:36736.1Re-query CCDS DB by GeneID:105171See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099356.9 ENSMUSP00000096957.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099356.9Link to Ensembl Protein Viewer:ENSMUSP00000096957.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099356Re-query CCDS DB by Protein ID:ENSMUSP00000096957
Original member NCBI NM_001042591.1 NP_001036056.1 Updated not alive Link to Nucleotide Sequence:NM_001042591.1Link to Protein Sequence:NP_001036056.1Re-query CCDS DB by Nucleotide ID:NM_001042591Re-query CCDS DB by Protein ID:NP_001036056
Current member NCBI NM_001042591.2 NP_001036056.1 Accepted alive Link to Nucleotide Sequence:NM_001042591.2Link to Protein Sequence:NP_001036056.1Re-query CCDS DB by Nucleotide ID:NM_001042591Re-query CCDS DB by Protein ID:NP_001036056Link to BLAST:NP_001036056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036056.1 414 Q7TPQ9 414 100% 0 0

Chromosomal Locations for CCDS 36736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 80883650 80883929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 80887406 80887487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 80889089 80889236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 80890096 80890198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 80890534 80890790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 80891062 80891224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 80891488 80891642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 80893370 80893426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGTGCTGGGAAAGGTAAAGAGTTTGACAATAAGCTTTGACTGTCTTAATGACAGTAATGTCCCCGTGT
ATTCTAGCGGGGACACTGTCTCAGGAAGGGTAAATTTAGAAGTTACCGGGGAGATCAGAGTAAAATCTCT
TAAAATTCACGCAAGAGGACATGCGAAAGTACGGTGGACGGAATCAAGAAACGCCGGCTCCAATACTGCC
TATACACAGAATTACACTGAAGAAGTAGAATATTTCAACCATAAAGACATCTTAATTGGGCACGAAAGAG
ATGATGATAATTCTGAAGAAGGCTTCCACACTATTCATTCAGGAAGGCATGAATATGCATTTAGCTTCGA
GCTTCCACAGACACCACTTGCTACCTCATTCGAAGGCCGACATGGCAGTGTGCGCTATTGGGTGAAAGCC
GAATTGCATAGGCCTTGGCTTCTACCAGTAAAATTAAAGAAGGAATTTACAGTCTTTGAGCACATAGATA
TCAACACTCCTTCATTACTGTCACCCCAAGCAGGCACAAAAGAAAAGACACTCTGTTGCTGGTTCTGCAC
CTCAGGCCCCATATCCTTAAGTGCCAAGATTGAAAGGAAGGGCTACACCCCAGGTGAATCAATCCAGATA
TTTGCCGAGATTGAGAACTGCTCTTCCCGAATGGTAGTGCCAAAGGCGGCCATTTACCAGACGCAGGCCT
TCTATGCCAAAGGGAAAATGAAGGAAGTAAAACAGCTTGTGGCAAACTTACGTGGCGAGTCTTTATCCTC
TGGGAAGACAGAGACGTGGAATGGCAAGCTGCTCAAAATCCCACCGGTTTCACCCTCCATCCTCGACTGT
AGTATAATCCGAGTGGAATATTCGCTAATGGTGTACGTGGATATTCCTGGGGCCATGGATTTGCTTCTCA
GTTTGCCCCTCGTCATCGGGACCATCCCTCTGCACCCGTTTGGTAGCAGAACCTCAAGTGTGAGCAGTCA
GTGTAGCATGAGTATGAACTGGCTGGCTCTGGCCCTTCCTGAAAGACCTGAAGCACCACCCAGCTATGCA
GAGGTTGTAACGGAGGAACAGAGACGGAATAATCTCGCCCCAGTGGGTGCTTGTGATGATTTTGAGAGAG
CTCTCCAAGGACCACTGTTTGCTTATATCCAGGAGTTTCGGTTCCTGCCCCCACCTCTCTATTCAGAGAT
TGATCCAAATCCTGATCAGTCATCCGAGGACAGACCATCATGCCCCTCTCGCTGA

Translation (414 aa):
MVLGKVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRNAGSNTA
YTQNYTEEVEYFNHKDILIGHERDDDNSEEGFHTIHSGRHEYAFSFELPQTPLATSFEGRHGSVRYWVKA
ELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLCCWFCTSGPISLSAKIERKGYTPGESIQI
FAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDC
SIIRVEYSLMVYVDIPGAMDLLLSLPLVIGTIPLHPFGSRTSSVSSQCSMSMNWLALALPERPEAPPSYA
EVVTEEQRRNNLAPVGACDDFERALQGPLFAYIQEFRFLPPPLYSEIDPNPDQSSEDRPSCPSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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