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Report for CCDS36648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36648.1 Public Mus musculus 13 Mylip 23 108 98 CCDS HistoryNCBI Gene:218203Re-query CCDS DB by CCDS ID:36648.1Re-query CCDS DB by GeneID:218203See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36648.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038275.10 ENSMUSP00000047403.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038275.10Link to Ensembl Protein Viewer:ENSMUSP00000047403.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000038275Re-query CCDS DB by Protein ID:ENSMUSP00000047403
Original member Current member NCBI NM_153789.3 NP_722484.2 Accepted alive Link to Nucleotide Sequence:NM_153789.3Link to Protein Sequence:NP_722484.2Re-query CCDS DB by Nucleotide ID:NM_153789Re-query CCDS DB by Protein ID:NP_722484Link to BLAST:NP_722484.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722484.2 445 Q8BM54-1 445 100% 0 0

Chromosomal Locations for CCDS 36648.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 45389957 45390043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45391189 45391379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45404400 45404585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45405893 45406090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45406557 45406721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45408356 45408776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45410421 45410510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGCTGTGCTATGTGACGAGGCCGGACGCGGTGCTGATGGAGGTAGAGGTGGAGGCAAAAGCCAACGGCG
AGGACTGTCTCAACCAGGTGTGCAGGCGTCTAGGGATCATCGAGGTTGATTATTTTGGGCTGCAGTTCAC
GGGGAGCAAAGGTGAGAGCTTATGGCTGAATCTGAGAAACCGGATCTCCCAGCAGATGGATGGGCTGGCA
CCTTACCGCCTTAAACTGAGGGTCAAGTTCTTTGTGGAGCCTCATCTCATCTTACAGGAGCAGACAAGGC
ATATCTTTTTCTTGCACATTAAAGAGTCCCTCTTGGCAGGCCACCTCCAGTGTTCCCCAGAGCAGGCCGT
GGAACTCAGTGCCCTCCTGGCTCAGACCAAATTTGGAGACTACAACCAGAACACCGCCCAATACAGCTAT
GAGGACCTGTGTGAGAAAGAGCTCTCCAGCTCCACTTTGAACAGCATCGTTGCGAAGCATAAGGAGCTGG
AGGGCATCAGCCAGGCCTCTGCCGAGTACCAGGTTCTGCAGATTGTGTCAGCGATGGAGAACTACGGCAT
AGAGTGGCATGCTGTGAGGGACAGCGAAGGACAGAAACTCCTCATTGGGGTCGGACCTGAAGGCATCTCG
ATCTGTAAAGAGGACTTTAGCCCTATTAACAGGATAGCTTATCCTGTGGTGCAGATGGCCACCCAGTCAG
GAAAGAATGTCTACTTGACCGTCACCAAGGAGTCCGGCAACAGCATCGTGCTCCTGTTTAAGATGATCAG
CACCAGAGCAGCCAGCGGCCTCTACCGAGCCATCACCGAAACACATGCATTCTATAGGTGTGACACAGTC
ACCAGTGCCGTCATGATGCAGTACAGTCGCGACCTGAAGGGCCACTTGGCGTCTCTGTTTCTGAACGAAA
ACATTAACCTTGGTAAGAAATACGTCTTCGACATCAAGAGAACATCCAAAGAGGTCTATGACCATGCCAG
GAGGGCTCTGTACAACGCCGGCGTTGTGGACCTTGTCTCTCGAAGTGACCAGAGCCCCCCCAGCTCACCC
CTGAAGTCCTCAGACAGCAGCATGAGCTGCAGCAGCTGTGAGGGCCTCAGCTGCCAGCAGACCCGGGTGC
TGCAGGAGAAGCTGCGCAAGCTGAAGGAAGCCATGCTGTGTATGGCGTGCTGCGAGGAGGAGATCAACTC
CACCTTCTGCCCCTGCGGCCACACTGTGTGCTGCGAGAGCTGTGCAGCCCAGCTGCAGTCCTGTCCGGTC
TGCAGATCCCGTGTGGAGCATGTCCAGCACGTCTACCTGCCCACCCACACCAGTCTCCTCAATCTGACTG
TCATCTGA

Translation (445 aa):
MLCYVTRPDAVLMEVEVEAKANGEDCLNQVCRRLGIIEVDYFGLQFTGSKGESLWLNLRNRISQQMDGLA
PYRLKLRVKFFVEPHLILQEQTRHIFFLHIKESLLAGHLQCSPEQAVELSALLAQTKFGDYNQNTAQYSY
EDLCEKELSSSTLNSIVAKHKELEGISQASAEYQVLQIVSAMENYGIEWHAVRDSEGQKLLIGVGPEGIS
ICKEDFSPINRIAYPVVQMATQSGKNVYLTVTKESGNSIVLLFKMISTRAASGLYRAITETHAFYRCDTV
TSAVMMQYSRDLKGHLASLFLNENINLGKKYVFDIKRTSKEVYDHARRALYNAGVVDLVSRSDQSPPSSP
LKSSDSSMSCSSCEGLSCQQTRVLQEKLRKLKEAMLCMACCEEEINSTFCPCGHTVCCESCAAQLQSCPV
CRSRVEHVQHVYLPTHTSLLNLTVI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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