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Report for CCDS3656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3656.1 Public Homo sapiens 4 SLC39A8 24 110 108 CCDS HistoryNCBI Gene:64116Re-query CCDS DB by CCDS ID:3656.1Re-query CCDS DB by GeneID:64116See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3656.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356736.5 ENSP00000349174.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356736.5Link to Ensembl Protein Viewer:ENSP00000349174.4Re-query CCDS DB by Nucleotide ID:ENST00000356736Re-query CCDS DB by Protein ID:ENSP00000349174
Original member Current member EBI ENST00000394833.6 ENSP00000378310.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394833.6Link to Ensembl Protein Viewer:ENSP00000378310.2Re-query CCDS DB by Nucleotide ID:ENST00000394833Re-query CCDS DB by Protein ID:ENSP00000378310
Original member Current member EBI ENST00000682932.1 ENSP00000507414.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682932.1Link to Ensembl Protein Viewer:ENSP00000507414.1Re-query CCDS DB by Nucleotide ID:ENST00000682932Re-query CCDS DB by Protein ID:ENSP00000507414
Original member Current member EBI ENST00000683412.1 ENSP00000507538.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683412.1Link to Ensembl Protein Viewer:ENSP00000507538.1Re-query CCDS DB by Nucleotide ID:ENST00000683412Re-query CCDS DB by Protein ID:ENSP00000507538
Original member Current member EBI ENST00000682227.1 ENSP00000508363.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682227.1Link to Ensembl Protein Viewer:ENSP00000508363.1Re-query CCDS DB by Nucleotide ID:ENST00000682227Re-query CCDS DB by Protein ID:ENSP00000508363
Original member Current member NCBI NM_001135146.2 NP_001128618.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135146.2Link to Protein Sequence:NP_001128618.1Re-query CCDS DB by Nucleotide ID:NM_001135146Re-query CCDS DB by Protein ID:NP_001128618Link to BLAST:NP_001128618.1
Original member Current member NCBI NM_022154.5 NP_071437.3 Accepted alive Link to Nucleotide Sequence:NM_022154.5Link to Protein Sequence:NP_071437.3Re-query CCDS DB by Nucleotide ID:NM_022154Re-query CCDS DB by Protein ID:NP_071437Link to BLAST:NP_071437.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128618.1 460 Q9C0K1-1 460 100% 0 0
NP_071437.3 460 Q9C0K1-1 460 100% 0 0

Chromosomal Locations for CCDS 3656.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102263044 102263193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102267490 102267674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102267872 102268079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102304317 102304481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102304989 102305111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102307436 102307605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102315668 102315830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102344444 102344662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGCCCCGGGTCGCGCGGTGGCCGGGCTCCTGTTGCTGGCGGCCGCCGGCCTCGGAGGAGTGGCGGAGG
GGCCAGGGCTAGCCTTCAGCGAGGATGTGCTGAGCGTGTTCGGCGCGAATCTGAGCCTGTCGGCGGCGCA
GCTCCAGCACTTGCTGGAGCAGATGGGAGCCGCCTCCCGCGTGGGCGTCCCGGAGCCTGGCCAGCTGCAC
TTCAACCAGTGTTTAACTGCTGAAGAGATCTTTTCCCTTCATGGCTTTTCAAATGCTACCCAAATAACCA
GCTCCAAATTCTCTGTCATCTGTCCAGCAGTCTTACAGCAATTGAACTTTCACCCATGTGAGGATCGGCC
CAAGCACAAAACAAGACCAAGTCATTCAGAAGTTTGGGGATATGGATTCCTGTCAGTGACGATTATTAAT
CTGGCATCTCTCCTCGGATTGATTTTGACTCCACTGATAAAGAAATCTTATTTCCCAAAGATTTTGACCT
TTTTTGTGGGGCTGGCTATTGGGACTCTTTTTTCAAATGCAATTTTCCAACTTATTCCAGAGGCATTTGG
ATTTGATCCCAAAGTCGACAGTTATGTTGAGAAGGCAGTTGCTGTGTTTGGTGGATTTTACCTACTTTTC
TTTTTTGAAAGAATGCTAAAGATGTTATTAAAGACATATGGTCAGAATGGTCATACCCACTTTGGAAATG
ATAACTTTGGTCCTCAAGAAAAAACTCATCAACCTAAAGCATTACCTGCCATCAATGGTGTGACATGCTA
TGCAAATCCTGCTGTCACAGAAGCTAATGGACATATCCATTTTGATAATGTCAGTGTGGTATCTCTACAG
GATGGAAAAAAAGAGCCAAGTTCATGTACCTGTTTGAAGGGGCCCAAACTGTCAGAAATAGGGACGATTG
CCTGGATGATAACGCTCTGCGATGCCCTCCACAATTTCATCGATGGCCTGGCGATTGGGGCTTCCTGCAC
CTTGTCTCTCCTTCAGGGACTCAGTACTTCCATAGCAATCCTATGTGAGGAGTTTCCCCACGAGTTAGGA
GACTTTGTGATCCTACTCAATGCAGGGATGAGCACTCGACAAGCCTTGCTATTCAACTTCCTTTCTGCAT
GTTCCTGCTATGTTGGGCTAGCTTTTGGCATTTTGGTGGGCAACAATTTCGCTCCAAATATTATATTTGC
ACTTGCTGGAGGCATGTTCCTCTATATTTCTCTGGCAGATATGTTTCCAGAGATGAATGATATGCTGAGA
GAAAAGGTAACTGGAAGAAAAACCGATTTCACCTTCTTCATGATTCAGAATGCTGGAATGTTAACTGGAT
TCACAGCCATTCTACTCATTACCTTGTATGCAGGAGAAATCGAATTGGAGTAA

Translation (460 aa):
MAPGRAVAGLLLLAAAGLGGVAEGPGLAFSEDVLSVFGANLSLSAAQLQHLLEQMGAASRVGVPEPGQLH
FNQCLTAEEIFSLHGFSNATQITSSKFSVICPAVLQQLNFHPCEDRPKHKTRPSHSEVWGYGFLSVTIIN
LASLLGLILTPLIKKSYFPKILTFFVGLAIGTLFSNAIFQLIPEAFGFDPKVDSYVEKAVAVFGGFYLLF
FFERMLKMLLKTYGQNGHTHFGNDNFGPQEKTHQPKALPAINGVTCYANPAVTEANGHIHFDNVSVVSLQ
DGKKEPSSCTCLKGPKLSEIGTIAWMITLCDALHNFIDGLAIGASCTLSLLQGLSTSIAILCEEFPHELG
DFVILLNAGMSTRQALLFNFLSACSCYVGLAFGILVGNNFAPNIIFALAGGMFLYISLADMFPEMNDMLR
EKVTGRKTDFTFFMIQNAGMLTGFTAILLITLYAGEIELE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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