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Report for CCDS36557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36557.1 Public Mus musculus 12 Ppp2r5c 23 108 98 CCDS HistoryNCBI Gene:26931Re-query CCDS DB by CCDS ID:36557.1Re-query CCDS DB by GeneID:26931See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084985.10 ENSMUSP00000082053.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084985.10Link to Ensembl Protein Viewer:ENSMUSP00000082053.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084985Re-query CCDS DB by Protein ID:ENSMUSP00000082053
Original member Current member NCBI NM_012023.4 NP_036153.2 Accepted alive Link to Nucleotide Sequence:NM_012023.4Link to Protein Sequence:NP_036153.2Re-query CCDS DB by Nucleotide ID:NM_012023Re-query CCDS DB by Protein ID:NP_036153Link to BLAST:NP_036153.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036153.2 524 Q60996-1 524 100% 0 0

Chromosomal Locations for CCDS 36557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110485859 110485952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110522491 110522690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110544075 110544185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110545595 110545687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110545771 110545901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110551062 110551121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110552785 110552893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110554843 110554896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110561298 110561468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110567728 110567855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110568954 110569055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110570696 110570768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110574745 110574861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110580401 110580532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGTTGACATGTAATAAAGCGGGCAGCGGGATGGTGGTGGATGCGGCCAGCTCCAACGGGCCTTTCCAGC
CCGTGGCCCTTCTCCACATTCGAGATGTTCCTCCTGCGGATCAAGAGAAGCTTTTTATCCAGAAGCTACG
CCAGTGTTGTGTCCTCTTTGACTTTGTCTCTGACCCACTGAGTGACCTGAAGTGGAAGGAAGTAAAGCGC
GCTGCGCTGAGCGAGATGGTGGAGTATATCACCCACAACCGGAACGTGATCACGGAGCCCATTTACCCCG
AGGCCGTCCACATGTTTGCAGTTAACATGTTCCGAACCTTGCCACCTTCCTCCAATCCCACGGGAGCAGA
ATTCGACCCAGAAGAGGATGAACCAACGTTAGAAGCAGCCTGGCCTCATCTGCAGCTTGTTTATGAATTT
TTCTTAAGATTTTTAGAGTCTCCAGATTTCCAACCCAATATAGCAAAGAAATATATTGATCAGAAGTTTG
TATTGCAGCTTCTAGAGCTGTTTGACAGCGAGGATCCTCGGGAGAGAGATTTTCTAAAAACCACCCTGCA
CAGAATCTATGGGAAGTTCTTAGGCCTGCGTGCTTACATCAGGAAACAGATCAATAATATATTTTATAGG
TTTATCTATGAGACAGAGCATCACAATGGCATAGCGGAGTTACTGGAGATCCTGGGAAGTATAATTAATG
GATTTGCCTTACCACTGAAGGAGGAACACAAGATTTTCCTGCTGAAGGTGTTGCTGCCCTTGCACAAAGT
GAAGTCCCTGAGTGTCTACCATCCCCAGCTGGCGTACTGTGTCGTGCAGTTTTTAGAGAAGGACAGCACC
CTCACTGAACCAGTGGTAATGGCACTTCTCAAATACTGGCCAAAGACTCACAGTCCAAAAGAAGTAATGT
TCTTAAATGAATTAGAAGAAATTTTAGATGTAATTGAACCATCAGAGTTTGTGAAGATCATGGAGCCTCT
TTTCCGACAGTTAGCCAAATGTGTTTCCAGCCCTCACTTCCAGGTGGCCGAGCGGGCGCTCTATTACTGG
AACAACGAGTACATCATGAGTTTAATCAGTGACAACGCAGCGAAGATTCTGCCCATCATGTTTCCGTCCT
TATACCGCAACTCAAAGACCCACTGGAACAAGACAATACACGGCTTGATATACAACGCCCTGAAACTCTT
CATGGAGATGAACCAAAAACTCTTCGATGACTGCACTCAGCAGTTCAAAGCAGAGAAACTCAAAGAGAAG
CTAAAAATGAAAGAGCGAGAAGAAGCATGGGTTAAAATAGAAAATCTAGCCAAAGCGAATCCCCAGTATG
CAGTGTATAGTCAAGCCAGCGCCGTGAGCATTCCGGTCGCAATGGAGACAGATGGGCCTCAGTTTGAAGA
TGTGCAGATGCTGAAAAAGACAGTGAGCGACGAGGCTCGTCAGGCACAGAAGGAGCTGAAGAAGGATCGT
CCCCTCGTGCGCCGCAAGTCCGAGCTGCCTCAGGACCCCCACACCGAGAAAGCCTTGGAAGCTCACTGCA
GAGCCAGTGAGCTGCTCTCCCAGGACGGGCGCTAG

Translation (524 aa):
MLTCNKAGSGMVVDAASSNGPFQPVALLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKR
AALSEMVEYITHNRNVITEPIYPEAVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEF
FLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR
FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST
LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW
NNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEK
LKMKEREEAWVKIENLAKANPQYAVYSQASAVSIPVAMETDGPQFEDVQMLKKTVSDEARQAQKELKKDR
PLVRRKSELPQDPHTEKALEAHCRASELLSQDGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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