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Report for CCDS36537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36537.1 Public Mus musculus 12 Serpina3k 23 108 98 CCDS HistoryNCBI Gene:20714Re-query CCDS DB by CCDS ID:36537.1Re-query CCDS DB by GeneID:20714See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043058.4 ENSMUSP00000042095.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043058.4Link to Ensembl Protein Viewer:ENSMUSP00000042095.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000043058Re-query CCDS DB by Protein ID:ENSMUSP00000042095
Original member Current member NCBI NM_011458.2 NP_035588.2 Accepted alive Link to Nucleotide Sequence:NM_011458.2Link to Protein Sequence:NP_035588.2Re-query CCDS DB by Nucleotide ID:NM_011458Re-query CCDS DB by Protein ID:NP_035588Link to BLAST:NP_035588.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035588.2 418 P07759 418 97.1292% 0 12

Chromosomal Locations for CCDS 36537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104340511 104341150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104342939 104343212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104344127 104344280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104345233 104345421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCCTTCATTGTAGCTATGGGGATGATTTTAATGGCTGGAATCTGTCCTGCTGTCCTATGCTTCCCAG
AT
GGCACAAAGGAAATGGACATTGTATTCCATGAACACCAAGACAATGGGACACAAGATGACAGTCTCAC
A
TTGGCCTCCGTCAACACTGACTTTGCCTTCAGTCTGTACAAGAAGCTGGCTTTGAAGAATCAAGATAAA
AAT
ATTGTCTTCTCCCCACTTAGCATCTCAGCTGCCTTGGCCCTCGTGTCCCTGGGAGCAAAGGGCAAGA
CC
ATGGAAGAGATTTTAGAAGGCCTCAAGTTCAATCTCACAGAGACCCCTGAAGCAGACATCCACCAGGG
C
TTTGGCAACCTCCTACAGAGTCTCAGCCAGCCAGAAGACCAGGATCAGATAAACATAGGCAATGCCATG
TTT
ATTGAAAAGGACCTGCAGATCCTGGCAGAATTCCATGAGAAGACAAGGGCTCTGTACCAGACTGAGG
CC
TTCACAGCAGACTTCCAGCAGCCTACTGAGGCCAAAAACCTCATCAATGACTATGTGAGCAATCAGAC
C
CAGGGGATGATCAAGAAACTGATCTCAGAACTGGATGATGGGACATTGATGGTGCTGGTGAATTACATC
TAC
TTTAAAGGCAAATGGAAGATATCCTTTGACCCCCAGGACACATTTGAGTCTGAGTTCTACTTGGATG
AG
AAGAGATCTGTGAAGGTTCCCATGATGAAAATGAAGTTACTGACTGCACGCCACTTCCGTGATGAGGA
G
CTATCGTGCTCTGTGTTGGAGCTGAAGTACACAGGAAATGCCAGTGCCCTGCTCATCCTCCCTGACCAA
GGC
AGGATGCAGCAGGTGGAAGCCAGCTTACAACCAGAGACCCTGAGGAAATGGAGGAAAACTTTGTTTT
CC
AGCCAAATAGAGGAGCTAAACCTGCCCAAGTTCTCCATCGCTAGTGACTACAGGCTGGAAGAGGATGT
C
CTTCCAGAAATGGGGATTAAGGAAGTCTTCACAGAACAAGCTGACCTATCTGGGATCACAGAAGCCAAG
AAA
CTGAGTGTGTCTCAGGTGGTCCACAAGGCTGTGCTGGATGTGGCTGAGACAGGCACAGAAGCAGCTG
CT
GCCACAGGGGTTATTGGTGGCATTCGTAAGGCCGTATTACCAGCTGTGTGTTTCAACAGGCCATTCCT
G
ATTGTTATCTATCACACAAGTGCTCAGAGTATCCTCTTTATGGCCAAAGTCAATAACCCCAAGTAG


Translation (418 aa):
MAFIVAMGMILMAGICPAVLCFPDGTKEMDIVFHEHQDNGTQDDSLTLASVNTDFAFSLYKKLALKNQDK
N
IVFSPLSISAALALVSLGAKGKTMEEILEGLKFNLTETPEADIHQGFGNLLQSLSQPEDQDQINIGNAM
F
IEKDLQILAEFHEKTRALYQTEAFTADFQQPTEAKNLINDYVSNQTQGMIKKLISELDDGTLMVLVNYI
Y
FK
GKWKISFDPQDTFESEFYLDEKRSVKVPMMKMKLLTARHFRDEELSCSVLELKYTGNASALLILPDQ
G
RMQQVEASLQPETLRKWRKTLFS
SQIEELNLPKFSIASDYRLEEDVLPEMGIKEVFTEQADLSGITEAK
K
LSVSQ
VVHKAVLDVAETGTEAAAATGVIGGIRKAVLPAVCFNRPFLIVIYHTSAQSILFMAKVNNPK



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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